RetrogeneDB ID: retro_taes_155

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 7A:122262924..122263524(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_7DS_A07A7A4F0
• Aliases: None
• Description: None

Sequence

>retro_taes_155
GCAATCCAAGATTTACATTGCCACTACTACATGCCAATCCTTCGGGGGAGCAGCCACCGTGACGATGCGATCTACAAGAA
GAGGCTTGACTGGGAGAGCGATTACGGCGTCGACATCGCCGACCGCACGGAGACTCTGCTTGAGCCATCGTACGTGGACG
ACATGACATGCGAAATGCTGCAGATTTTCTCGCTGAAGCTAGCCAAGTCTCCTGTCACTGCCAGTGCCAGCAATGGCTCG
ATAGAGCTATATGGATTCATGGCGGCACGAGACGAGTACGATTTGAAGCTCAACTATGTTTTCAACCGCGGCAGAGAAGA
TCCCGTCGTCGTGCAAGAGGGCTCGCTCATCCAGATGACCGGCCCCAGGAGAGGCCTTGCGTTTCACTGCGACGTTCTGC
TTGAGTTCGACATGAGGATCAAGAACGGGGAGAAAGAAGAAGACGACGCGCAGCTGATCGACGGAATGTCTGAATTTCGA
GGACTGCTCATGCCGTGGGAACCGACCCCGGTTCGCCTGGATGGGGATCGCGGAGCGGTTGAAGTGTCTTCTGCACTTGC
TAGGAATGCTGTCGCGGCCATTGTAGAGGNGAGGTTATCG

Alignment

ORF - retro_taes_155 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.5 %
• Parental protein coverage: 61.08 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AIQDV---YYQPIIPGSSHRDGTIYKKRLEWESEYCVDVDDRTETQLEPASWDDMTCEMMQIFSLKLAKS
          AIQD....YY.PI..GSSHRD..IYKKRL.WES.Y.VD..DRTET.LEP...DDMTCEM.QIFSLKLAKS
Retrocopy AIQDLHCHYYMPILRGSSHRDDAIYKKRLDWESDYGVDIADRTETLLEPSYVDDMTCEMLQIFSLKLAKS

Parental  PI----NSGSMQLYGYIAARDEYDLRLNYLFNRSREDPIVVQQGFLIQMTGPKRGIAFHCDVLLEFGMRI
          P.......GS..LYG..AARDEYDL.LNY.FNR.REDP.VVQ.G.LIQMTGP.RG.AFHCDVLLEF.MRI
Retrocopy PVTASASNGSIELYGFMAARDEYDLKLNYVFNRGREDPVVVQEGSLIQMTGPRRGLAFHCDVLLEFDMRI

Parental  KNGENEGDDTQLIDGMSEFRGLLMPWEPTEIPINGNCATVEMSAALVSNAIAAIVEVIIS
          KNGE.E.DD.QLIDGMSEFRGLLMPWEPT.....G....VE.S.AL..NA.AAIVE...S
Retrocopy KNGEKEEDDAQLIDGMSEFRGLLMPWEPTPVRLDGDRGAVEVSSALARNAVAAIVEXRLS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_155 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_7DS_A07A7A4F0	3 retrocopies	retro_taes_11, retro_taes_155 , retro_taes_165,