RetrogeneDB ID: retro_taes_150

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 6A:197045633..197046194(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_2AL_F5BCAC94C
• Aliases: None
• Description: None

Sequence

>retro_taes_150
GAAAAGAACAATGTCATGGTCATTGCCACCATTCTTGATCCGAGGTTTAAGATGAAACTTGTTGATTACTGTTTTAAGAA
AATGTATGGTAAAGAGAAGGGCAGTAGTGAGGCCGAGGAAATCAAATCTGAATTCTTTGATCTCTATGCTACTTATGAGA
TGGAAAATCACAAGAATGAGGCTGGCAACAATAATGAACAGAGTTCAATATCTAGTAGGCAAACAAGTACATCCATGTTC
TCATTGTCAAGTGGGTTTCAGTCCTTGCTAGAAGAGACAAATTCAGAGCCATCTAAATCTGAATTGACCAGCTACCTTGA
AGACAAAACCCATCCAATTGTGGATCCAAAGTTCAGCGTAGTTGATTGGTGGAGGTTGAATGCTCATAGATATCCTATCA
TGGCAAAGATGGCAAAGAAGTTCTTGACTATACCAGCAACCAGTGTCTCATCAGAGTCAACATTCTCTACGAGCGGCAGA
ATTCTCAATGACTATCGTAGCTCTCTCAGCCCAAACATGGTTGAGGCACTTGTGTGTGCTTCTAGCTACATCAAGGGATC
A

Alignment

ORF - retro_taes_150 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.27 %
• Parental protein coverage: 76.79 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EKNNAMVITTIFDPRYKMGYIEWAFGELYG-EGSTRFRSEIKIVEKELAALYDKCVAQDKRAGNGESSSS
          EKNN.MVI.TI.DPR.KM......F...YG.E.......EIK.....L.A.Y...........N.E.SS.
Retrocopy EKNNVMVIATILDPRFKMKLVDYCFKKMYGKEKGSSEAEEIKSEFFDLYATYEMENHKNEAGNNNEQSSI

Parental  S---TNIPSIPVQAGYESFLSSRSTRISKSELRNYLEDEVAPR-NKALDLLGWWKDNAPRYPIMAKIARR
          S...T.........G..S.L.......SKSEL..YLED...P..........WW..NA.RYPIMAK.A..
Retrocopy SSRQTSTSMFSLSSGFQSLLEETNSEPSKSELTSYLEDKTHPIVDPKFSVVDWWRLNAHRYPIMAKMAKK

Parental  FLTIPATSVSSESTFSTTGRISDDYRSSLKPVMVEALVCGASYIKGA
          FLTIPATSVSSESTFST.GRI..DYRSSL.P.MVEALVC..SYIKG.
Retrocopy FLTIPATSVSSESTFSTSGRILNDYRSSLSPNMVEALVCASSYIKGS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_150 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_2AL_F5BCAC94C	1 retrocopy	retro_taes_150 ,