RetrogeneDB ID: retro_taes_136

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 5B:141407539..141408001(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_5DL_82E82F8F9
• Aliases: None
• Description: None

Sequence

>retro_taes_136
ATGCTGTCGGCCTCCGGAAGACTAAACGGCATGCTCTCCGACACCCTGCGTAGCTACGGCGCCCCCGGCGGCGGCGTCGG
CATGGGTCTCGGCGGACACCATCATCATCTCCACGGCGCGCAGCCCTTCGGGCTGGGGTCCCGGTTCATGCCCAAGCTCC
CCGCCAAGCGCAGTATGCGCGCGCCCCGCATGCGCTGGACCAGCACCCTCCATGCCCGCTTCGTCCACGCCGTGGAGCTC
CTCGGCGGCCACGAGAGTACGTACCACTACCACCAAACCAATCTCTCCGACGCCGACGACGAGCGCGCGCGCTACCTACG
TAACGTAGTACCTTTCGCTGATCAAAATCTAACCTCTGGCAGGGGCGACGCCCAAGTCAGTCCTAGAGCTCATGGACGTG
AAGGATCTGACGCTAGCGCATGTGAAGAGCCATCTCCAGGTACCAGCAATTCTGAACCCCGA

Alignment

ORF - retro_taes_136 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.78 %
• Parental protein coverage: 61.57 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MLSASGRLNGMLSDTLRSYGAPGGGVGMGLGGHHHHLHGAQPFGLGSRFMPKLPAKRSMRAPRMRWTSTL
          MLSASGRLNGMLSDTLRSYGAPGGGVGMGLGGHHHHLHGAQPFGLGSRFMPKLPAKRSMRAPRMRWTSTL
Retrocopy MLSASGRLNGMLSDTLRSYGAPGGGVGMGLGGHHHHLHGAQPFGLGSRFMPKLPAKRSMRAPRMRWTSTL

Parental  HARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVPMYRTVKSTDKPAASGPTDGGSGDDDFP
          HARFVHAVELLGGHE.........L.D..D..........................S....G..G.D...
Retrocopy HARFVHAVELLGGHESTYHYHQTNLSDADDERARYLRNVVPFADQNLTSGRGDAQVSPRAHGREGSD---

Parental  SAGGQAGSGGDNNMCPR
          .......S.G..N..PR
Retrocopy ASACEEPSPGTSNSEPR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_136 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_5DL_82E82F8F9	1 retrocopy	retro_taes_136 ,