RetrogeneDB ID: retro_taes_131

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 4A:109703318..109704230(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_7DS_23781E457
• Aliases: None
• Description: None

Sequence

>retro_taes_131
CCTTTCACGGACCTTGAAACTCAGGCTGTTCTCCCTGGAATTGAGATCAATGATTGTGGGTACAAGATAGGCCTAAATGT
TGTAGATAGTGGTGCCCTGAGATTCTATTCAGTTAGGATACCTCGTGACAACCTTCTGAACCGATTCGGTGATGTGGCGC
GAGATGGAAAATACATAAGCAGTCTCCCCACGATTAACAGAAGATTTGCAGCAACCCTCGGTGAGCTTGTTGGGGGGAGT
TGTCCTTGCATATAGTTTTGTGGGAGTACTCAAAGTTGCAGTGACCATTGCTGTTAGATATGCTTTACTGCGTCAACAGT
TTGGTCTACCTAAGGAGTCTGAAATCAGTGTGATGGATTACCAATCGCACCAGCATAAACTAATGCCTATGTTGGCATCA
GCGTATGCATTTCATTTTTCCAGAGCGTATTTGGTAGATATGTACTCGGAAATGAAGAAAACCAATGACGAGGATGTTAC
GGATGATGTCCATGTACTTTCATCTGGGTTGAAATCCTACATAACTTCATACACAGCAAAATCTATCCGCATATGCCGAG
AATCGTGTGGTGTCCATGGGTATCCTGCTGTAAATCATTTTGGTGGTCTGTGGAATGATCATGATATATTTCAAACATTT
GAAGGAGACAACATAGTTCGCTGCAGCAGGTTGCTGGAGATCTCCTGAAGCAATATCAACAAAAATTCAAGGGATGAACA
CTCTCAGTCACCTGGAACTACTTGAGAGACTCCATTGGCACCTACTTGTCTCAGCCTAATCATGTTACTGCTCAGTGGGA
AGGGGAAGATCATCTCAGGGATCCTAAATTTCAGTTGGATACATTCAGATACCGAACATCTTGACTACTTCATAGTGTTG
TTGCTTGACTCCAGAAGCACGTGAAGACACTC

Alignment

ORF - retro_taes_131 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.93 %
• Parental protein coverage: 59.34 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  PIRDLETHAVLPGIEINDCGHKIGLNGVDNGALRFRSVRIPRDNLLNRFGDVARDGKYTSSLPTINRRFA
          P..DLET.AVLPGIEINDCG.KIGLN.VD.GALRF.SVRIPRDNLLNRFGDVARDGKY.SSLPTINRRFA
Retrocopy PFTDLETQAVLPGIEINDCGYKIGLNVVDSGALRFYSVRIPRDNLLNRFGDVARDGKYISSLPTINRRFA

Parental  ATLGELV-GGRVGLAYSSVGVLKVAVTIAVRYALLRQQFGPPKEPEISVLDYQSHQHKLMPMLASAYAFH
          ATLGELV.GG.V.LAYS.VGVLKVAVTIAVRYALLRQQFG.PKE.EISV.DYQSHQHKLMPMLASAYAFH
Retrocopy ATLGELV>GGVV-LAYSFVGVLKVAVTIAVRYALLRQQFGLPKESEISVMDYQSHQHKLMPMLASAYAFH

Parental  FARAYLVDMYSEMKKTNDEDVTADVHVLSSGLKSYITSYTAKSISICRESCGGHGYAAVNRFGGLRNDHD
          F.RAYLVDMYSEMKKTNDEDVT.DVHVLSSGLKSYITSYTAKSI.ICRESCG.HGY.AVN.FGGL.NDHD
Retrocopy FSRAYLVDMYSEMKKTNDEDVTDDVHVLSSGLKSYITSYTAKSIRICRESCGVHGYPAVNHFGGLWNDHD

Parental  IFQTFEGDNTV-LLQQVAGDLLKQYQQKFKGGTLSVTWNYLRDSMGTYLSQPNPVTARWEGEDHLRDPKF
          IFQTFEGDN.V..LQQVAGDLLKQYQQKFKG.TLSVTWNYLRDS.GTYLSQPN.VTA.WEGEDHLRDPKF
Retrocopy IFQTFEGDNIV<SLQQVAGDLLKQYQQKFKG*TLSVTWNYLRDSIGTYLSQPNHVTAQWEGEDHLRDPKF

Parental  QLDAFRYRTSRLLHSVAARLQKHMKTL
          QLD.FRYRTS.LLHSV.A.LQKH.KTL
Retrocopy QLDTFRYRTS*LLHSVVA*LQKHVKTL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_131 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_7DS_23781E457	1 retrocopy	retro_taes_131 ,