RetrogeneDB ID: retro_taes_129

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 3D:98539885..98540812(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_2DS_B81752301
• Aliases: None
• Description: None

Sequence

>retro_taes_129
AATGATCTCGACTTATCAAACATTAGGGTACTTTGTGATCGATTCTTGGCTCTTTCTGAGTACAGAGCTCAGCTGTATGA
TTATCTGAAAAGTAGGACGAGTGCAATCGCACCAAATTTAACTGTACTAGTGGGCAAACTTATTGGTGCTTGACTTATTT
CACATGATGGCAGTCTTCTAAATTTGGCCAAGCAGCCTGGTAGCACAATTCAGATACTCGATGCAGAGAAGGCTTTATTC
AGAGCTCTGAAGTCAGAACATGCTACACCTAAGTATGGCATCATCTACCATGCATCCTCGATTGTCAGGCAGCTCCAAAA
CACAAGGAAAAAATTTCTCGTTCGTTTGCTTCAAAAGTCACTCTTGCCATCCGGTGTGATGCCCTTGGTGACGGTGAAGG
TAACTCCATCGGTCTTTAGAGTCAACTGAAGCTTGAAACATGGGTTCAGATTCTTGAGGGTAGAGAACTAGGGAGATCTG
CTGGTTCCACGAAGGGAACGCCCAAGATAGAAGTGTACGGAAAAGACTGGAAGAAGGGTGCTGGGTTAATTACTCCTGCT
AAAACGTACAATCCGTTCGCTGATCTGGTTCGTGCACAATCTACCGAACAAACACCATAGAAGCTTGAGGCGGCTTCAAC
GAAGAAGAAACATGATGATGCGGAGACTGCACCATCAACTGAGCTTGCTGGCGAAGCAATTCAAAAAGGGTGGGAACCAG
GAAAATCGGAAGAGTACAAGGACAGTGAGGAGTCTCCTGCAGGGGGTGCTAATGGCGACAAGAAAAGAAAAGGAGTCCAA
GGAGAGCAAGGATCCTGACATGACCACTGCCGAAGGCAAGAAGTAAAAAAAGAAGAAAACCAAAGCACAAGCTGAGGAGA
TTGTCATCATGGAAGCTGAGTCTAGTTAAGGGGATAAAACAAAGAAG

Alignment

ORF - retro_taes_129 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.42 %
• Parental protein coverage: 55.36 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  NDLDLSNIRELCDQVLALSEYRAQLYDYLKSRMNTIAPNLTALVGELVGARLISHGGSLMNLAKQPGSTI
          NDLDLSNIR.LCD..LALSEYRAQLYDYLKSR...IAPNLT.LVG.L.GA.LISH.GSL.NLAKQPGSTI
Retrocopy NDLDLSNIRVLCDRFLALSEYRAQLYDYLKSRTSAIAPNLTVLVGKLIGA*LISHDGSLLNLAKQPGSTI

Parental  QILGAEKALFRALKTKHATPKYGLIYHASLI-GQAAPKHKGKISRSLAAKSALAIRYDALADGDDNSMGL
          QIL.AEKALFRALK..HATPKYG.IYHAS.I..QAAPKHK.KISRS.A.K..LAIR.DAL.DG..NS.GL
Retrocopy QILDAEKALFRALKSEHATPKYGIIYHASSI<CQAAPKHKEKISRSFASKVTLAIRCDALGDGEGNSIGL

Parental  ESRIKLETRLRVLEGKELGRSAGSTKGKPKIEAYEKDRKGGGALITPAKTYNSAADLVLGQTTEETPKKS
          .S..KLET....LEG.ELGRSAGSTKG.PKIE.Y.KD.K.G..LITPAKTYN..ADLV..Q.TE.TP.K.
Retrocopy *SQLKLETWVQILEGRELGRSAGSTKGTPKIEVYGKDWKKGAGLITPAKTYNPFADLVRAQSTEQTP*KL

Parental  EVASKKRKHQEEEPTAEAAEQDGEQ-EKEKSKKKKKKSKDIEETPA-AVTDASEKKKKKKSKEAEDTPAA
          E.AS.K.KH...E.TA...E..GE...K.....K....KD.EE.PA..V..A..K.K..K..E..D....
Retrocopy EAASTKKKHDDAE-TAPSTELAGEAIQKGWEPGKSEEYKDSEESPA>GVLMATRKEKESK--ESKDPDMT

Parental  NTDGEK-KKKKKKSDAEDAPMEVDVSAKKEKKKK
          ...G.K...KK.K..AE........S....K.KK
Retrocopy TAEGKKXXXKKTKAQAEEIVIMEAESS*GDKTKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_129 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_2DS_B81752301	1 retrocopy	retro_taes_129 ,