RetrogeneDB ID: retro_taes_127

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 3B:773690506..773690971(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: TRAES3BF092800020CFD_g
• Aliases: None
• Description: None

Sequence

>retro_taes_127
ATTGCGACGCCGATCTCTCCAATGGCCTTGGTGATGGCACTGCTGCTAGCCTCGCTGGTTGCGCTGTCCTCAGCGCACGA
CGGACACCAGCACCTGCTGGCTGTAACCCGAGCCCTGGCCATCATCATATTCATGACCATGGTCCGGCGTCGGCTCCTGC
TCCCGCTCACAGCACTCTAGCGCCGAGCCCTACTCACCATCATCATTATCATCACCATGGTCCGTCTTTGGCGCCTGCTC
CTGCTCAGGATGGTCACCCCGCTCCAGAGCCGAGCCCTAATCACCATCATCATCATCACCATAGTCCGGCGTCGGCGTCC
TCCCCCGCTCGGTGACCACCACCATGGTCACAACGCTCCAGCGCCAAGCCCTAATCACCATCCTCATCATCACCATGGTC
AATCATCAGCACCTGCTCCAGCTCACAATGGTCACAACGCTCCAGTGCCGAGCCCTAGTCACCAT

Alignment

ORF - retro_taes_127 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.5 %
• Parental protein coverage: 50.99 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MATRISPMAAVMALLLASLVALSSAHDGHHHAPAPSA-SHHHHHGPSSAPAPAHGDHHHGHDAPAPSPNQ
          .AT.ISPMA.VMALLLASLVALSSAHDGH.H..A....S..HHH.....PA.A.......H...APSP..
Retrocopy IATPISPMALVMALLLASLVALSSAHDGHQHLLAVTR<SPGHHHIHDHGPASAPAP---AHSTLAPSPTH

Parental  HHH-HHHGPSSAPTPAHNGHHAPAPSPT--HHQHLHHAPA-PGP-GDHHHGHDAPSPSPSHHNHHQHGPS
          HHH.HHHGPS.AP.PA..GH.AP.PSP...HH.H...A.A.P.P.GDHHHGH.AP.PSP.HH.HH.HG.S
Retrocopy HHHYHHHGPSLAPAPAQDGHPAPEPSPNHHHHHHHSPASA>PPPLGDHHHGHNAPAPSPNHHPHHHHGQS

Parental  PAPAPAHDAHHAPAPSASHH
          .APAPAH..H.AP.PS.SHH
Retrocopy SAPAPAHNGHNAPVPSPSHH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_127 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	TRAES3BF092800020CFD_g	1 retrocopy	retro_taes_127 ,