RetrogeneDB ID: retro_taes_124

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 3B:27587518..27588001(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_6BL_22515EB16
• Aliases: None
• Description: None

Sequence

>retro_taes_124
TCATCATCATCATCCACTAAGCCGTCCCAGCGGCAGCCCGCTCCAACTCCACGGCCGGCGGCCAAACCATCCCCGTCCCC
GTCCGCGCCTGCCGTCGTCGTCAGGTTCTCCGATGACACGGCGCGGCTACGGAAGATCAACGAAGTGAGGACGTCCACCG
TCGGGCACCAGATGAAAACCGTGATCGACCTGCTCGACAAGACGAGGGAAGCTCTTACGTCGCATCAGATCAACCAACGG
ACCTACGTCGACATCGACGGCAACAGGACCCTCGCCGAGAGCCTCAGGAACAACGTCAAGGTGCGCTTTGACGGGCGACG
ATACTCCTACAAGCCTACGCACGACGTCAAGGGCAAAGGCGAGCTGCTTACGCTGATCAAGAGCTTCCCCGACGGCCTCC
CGGCGTCCGAGGTGGATGACGCGTATCCGGCCGTCCTGGAGGATCTACAGGTTCTCAAAACCTCTGGTGACGTCTATCTG
CTA

Alignment

ORF - retro_taes_124 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 52.17 %
• Parental protein coverage: 56.74 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ASIAASQASTTKPKHRAQPINAPS-APARPAQPIKFSNDTERLQHINSIRKSPVGAQIKLVIELLYKTRQ
          .S......S...P.....P...PS..P..PA....FS.DT.RL..IN..R.S.VG.Q.K.VI.LL.KTR.
Retrocopy SSSSSTKPSQRQPAPTPRPAAKPSPSPSAPAVVVRFSDDTARLRKINEVRTSTVGHQMKTVIDLLDKTRE

Parental  AFTAEQINDATYVDINGNKAVFDSLRNNLKVHYDGRRFSYKSKHDLEGKDQLLDLIRCHQEGLAVVEVKD
          A.T..QIN..TYVDI.GN.....SLRNN.KV..DGRR.SYK..HD..GK..LL.LI.....GL...EV.D
Retrocopy ALTSHQINQRTYVDIDGNRTLAESLRNNVKVRFDGRRYSYKPTHDVKGKGELLTLIKSFPDGLPASEVDD

Parental  AYPSVLEDLQALKAAGEVWLL
          AYP.VLEDLQ.LK..G.V.LL
Retrocopy AYPAVLEDLQVLKTSGDVYLL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_124 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_6BL_22515EB16	3 retrocopies	retro_taes_124 , retro_taes_189, retro_taes_190,