RetrogeneDB ID: retro_taes_10

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: IWGSC_CSS_4DS_scaff_2265275:1..823(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: Traes_4DS_256451F93
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_5BS_4D44AE9D6
• Aliases: None
• Description: None

Sequence

>retro_taes_10
TCCAGGCTCCTTGTCAAAGAAGGACATCAGGTTACATTGTTCACAAGAGGTAAATCTCCTATTGCCAAACAACTCCCTGG
CGAATCTGACCAAGACTTTGCTGACTTTTCTTCCAAGATTCTTCACTTGAAAGGAGACAGAAAGGACTATGACTTTGTGA
AGTCAAGTCTTTCAGCTGAAGGCTTCGATGTTGTTTATGATATCAACGGGAGAGAAGCTGAAGAAGTTGAGCCAATATTA
GATGCACTGCCTAAACTAGAACAGTACATATACTGTTCTTCAGCTGGTGTTTACCTGAAATCTGATGTCTTGCCACACTG
TGAGGTGGATGCAGTTGACCCAAAGAGCAGGCACAAGGGAAAGCTGGAGACAGAGAGCTTACTGCAATCAAAAGGTGTAA
ACTGGACTTCTATTCGTCCTGTCTACATCTACGGTCCATTGAACTACAACCCCGTTGAAGAATGGTTCTTCCACCGTCTC
AAAGCTGGTCGCCCTATCCCAGTTCCAAACTCTGGGATCCAAATCTCACAACTCGGTCACGTTAAGGACTTGGCAACAGC
CTTTCTCGCCGTGCTTGGTAACGAGAAAGCTAGCAGGGAGATATTCAACATCTCAGGAGAGAAGTATGTCACCTTTGATG
GGTTAGCAAGAGCTTGCGCAAAGGCTGGTGGGTTTCCAGAGCCAGAGATTGTTCACTACAACCCGAAAGAGTTCGACTTT
GGGAAGAAGAAGGCGTTCCCTTTCCGTGACCAGCATTTCTTTGCCTCGGTGGAGAAAGCAAAGCATGTACTTGGATGGAA
ACCAGAGTTCGACTTGGTGGAG

Alignment

ORF - retro_taes_10 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.12 %
• Parental protein coverage: 72.68 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SRKLVQEGHQVTLFTRGKAPITQQLPGESDAEYAEFSSKVLHLKGDRKDFDFVKTSLAAKGFNVVYDING
          SR.LV.EGHQVTLFTRGK.PI..QLPGESD...A.FSSK.LHLKGDRKD.DFVK.SL.A.GF.VVYDING
Retrocopy SRLLVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDING

Parental  REATEVSPILEALPNLEQFIYCSSAGVYLKSDLLPHFETDAVDPKSRHKGKLETESLLETSGVNWTSIRP
          REA.EV.PIL.ALP.LEQ.IYCSSAGVYLKSD.LPH.E.DAVDPKSRHKGKLETESLL...GVNWTSIRP
Retrocopy REAEEVEPILDALPKLEQYIYCSSAGVYLKSDVLPHCEVDAVDPKSRHKGKLETESLLQSKGVNWTSIRP

Parental  VYIYGPLNYNPVEEWFFHRLKAGRPIPIPNAGNQITQLGHVKDLATAFIKVLDNPKASKQVYNISGSKYV
          VYIYGPLNYNPVEEWFFHRLKAGRPIP.PN.G.QI.QLGHVKDLATAF..VL.N.KAS....NISG.KYV
Retrocopy VYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAFLAVLGNEKASREIFNISGEKYV

Parental  TFDGLARACAKAGGFPEPEIIHYNPKDFDFGKKKAFPFRDQHFFASVEKASKDLGVTPEYDLLD
          TFDGLARACAKAGGFPEPEI.HYNPK.FDFGKKKAFPFRDQHFFASVEKA...LG..PE.DL..
Retrocopy TFDGLARACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_10 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_5BS_4D44AE9D6	1 retrocopy	retro_taes_10 ,