pgwin88

789betwin

ufabet

pgwin88

baht89

https://rr.lpsh.net/amp

ufabetwin

https://brss.pattani1.go.th/video/

https://sp.moe.go.th/web_sp_68/book/

https://dol-bangkok.com/video/

ufabetwin

okvip

okvip

https://aicode.cyp.ac.th/video/

max77

RetrogeneDB - Retrocopy retro_stub_94 details

RetrogeneDB ID:

retro_stub_94

Retrocopy
location
Organism:Potato (Solanum tuberosum)
Coordinates:11:35222182..35223381(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:PGSC0003DMG400028548
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_stub_94
ATGGCTTCCGGGGGAAAGGGAATGTTGGAGAAGGTGAAGAGGTTTTTGAAGATTATATATTTCATGGTGGCGATGTTGGC
ATTGTTGCTGGTACTATCGGCGCCGCTGATTGTGGCAATTGGGGATGGTTTGGTACCAAGTGTGTTGATTTCGACCTTTA
CATGCGTAAGATGTTACAGTTTCAAAGAACATTTGCAGAGATATGCCTTCAAAAGCACATTGACGGACATTCCTCTCGTT
TCTGTGATGAGATCTCTTATTATCCCCTATGTTTATTCTTTGTGTGATGGCCCTGCTCTTTCGCATGGACCATACCTCGG
AATGGTTATATTCTGTTCTATCATTTCCATTATTCTTCTTTCTATCAAAGCTTGTATTTTCTGTCAATTCATATCTGGAG
GTTGAAGCTTCATCTTCTATCTCAAGGCAAAGGCCTCATCTGAAAAAGTCATGGGGGTGTGCCTGTGTTGTTTCTTTCTT
CGGTAGTCTTAGCTCTTGGACATGCTATAATTGCTTACAGAACAATCTTTTGAGCAAGGAGGAAGCTTTTGTTTCACCGA
GTTGACCCAGAAGCTGTCCTTTCGTGCAAAGTTGGATTCTCTTCATACAGTAAGGTACCACAATCACCAATTCCGACAGG
TAAAACAAGAACTGAGAGTGATATGAGGAGAAAACTTGCAGGATCGGCTCATGAGGATGGGAAAGTCCCTGCTATATTGC
TTGCTGATGTTGACAGTTCTTTCATTTCTTGCCTTGGGCTCTCTCTTCATTACAAACTTTGCTTGCCTGGCTCACCTTAC
TGTTCTTTGTCTTTCAGACCTTCTTCTGCTCACCCATTGCAGGTTTTGTCAAAAAGTGATTATCGTATTCGGAGGTGCCA
CAGTAGTCAATTTCATACCCACACTCTCTCTATGCCTCTTTTAGATGTGTCTCCAACTTCCCCAGTTCTGTCTGAAGAAA
TTCCTAGTTTCAGCCTAGATGAAACTGGTGATGATGATGATGTTGGTAAGGTGGGATGTTCATTCCCAGTATGAGATGTT
GAAGGGAATAATCAGTTTATTACTGTTCTAGTGCATGGTTTTGGAGCCGGAGGTTTCTCTTAGAGAATGATGATGGATGA
ACTAGCCCGATAGGTAGGTTGTGCAGTCACAGCCCTCTACAGGCCAGGATGGGGATTGACATCTAGGCCATGTCAGAGA

ORF - retro_stub_94 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.08 %
Parental protein coverage: 63.09 %
Number of stop codons detected: 4
Number of frameshifts detected: 2


Retrocopy - Parental Gene Alignment:

ParentalMGSGGKGMLEKVKRFLKIIYFMVAMLASLLVLSAPLIVAIGDVLVPSVLISSFTCVKCYSFKEHLHRYAF
M.SGGKGMLEKVKRFLKIIYFMVAMLA.LLVLSAPLIVAIGD.LVPSVLIS.FTCV.CYSFKEHL.RYAF
RetrocopyMASGGKGMLEKVKRFLKIIYFMVAMLALLLVLSAPLIVAIGDGLVPSVLISTFTCVRCYSFKEHLQRYAF
ParentalKSSLTDIPIVSIMRSLIITCVYSLCDGPALSHGPYLGTVTFCSIISVILLS-IKACVFSVNSYLEVEASS
KS.LTDIP.VS.MRSLII..VYSLCDGPALSHGPYLG.V.FCSIIS.I.L......VFSVNSYLEVEASS
RetrocopyKSTLTDIPLVSVMRSLIIPYVYSLCDGPALSHGPYLGMVIFCSIIS-IILL>LSKLVFSVNSYLEVEASS
ParentalSISRQRLHLKKSWG-MPVLFLSSVVFALGHTVIAYRTSCRARRKLLFHRVDPEAVLPCKVVFSAYNKVPR
SISRQR.HLKKSWG..PVLFLSSVV.ALGH..IAYRT...ARRKLLFHRVDPEAVL.CKV.FS.Y.KVP.
RetrocopySISRQRPHLKKSWG>VPVLFLSSVVLALGHAIIAYRTIF*ARRKLLFHRVDPEAVLSCKVGFSSYSKVPQ
ParentalSPTPTGKTRTESDMRRKLAGSAHEEGEVPAILLADVDSSFISCLGLSVHYKLCLPGSPYRSLSSTPSSAN
SP.PTGKTRTESDMRRKLAGSAHE.G.VPAILLADVDSSFISCLGLS.HYKLCLPGSPY.SLS..PSSA.
RetrocopySPIPTGKTRTESDMRRKLAGSAHEDGKVPAILLADVDSSFISCLGLSLHYKLCLPGSPYCSLSFRPSSAH
ParentalPLHVLSKSDYRIRRSQSTQFHTHTLSMPLLDVSPTSPVLSEEIPTFCLDETGDEDDVGKVGCSFPVRDVE
PL.VLSKSDYRIRR..S.QFHTHTLSMPLLDVSPTSPVLSEEIP.F.LDETGD.DDVGKVGCSFPV.DVE
RetrocopyPLQVLSKSDYRIRRCHSSQFHTHTLSMPLLDVSPTSPVLSEEIPSFSLDETGDDDDVGKVGCSFPV*DVE
ParentalGNNQFGIVLVHGFGGGVFSWRNVMDDLAQQVGCAVTAFDRPGWGLTSRPRQR
GNNQF..VLVHGFG.G.FS.R..MD.LA..VGCAVTA..RPGWGLTSRP.QR
RetrocopyGNNQFITVLVHGFGAGGFS*RMMMDELAR*VGCAVTALYRPGWGLTSRPCQR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Solanum tuberosum was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Solanum tuberosum was not studied using ChIP-Seq data.

EST - click to see more details

Solanum tuberosum was not studied using EST data.

TSS - click to see more details

Solanum tuberosum was not studied using FANTOM5 data.

Lab - click to see more details

retro_stub_94 was not experimentally validated.

Retrocopy orthology:
Solanum tuberosum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Solanum tuberosum PGSC0003DMG400028548 1 retrocopy
retro_stub_94 ,


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