slot maxwin

slot resmi

indohoki77

pgwin88

789betwin

ufabet

pgwin88

baht89

https://rr.lpsh.net/amp

ufabetwin

https://brss.pattani1.go.th/video/

https://sp.moe.go.th/web_sp_68/book/

https://dol-bangkok.com/video/

ufabetwin

okvip

okvip

https://aicode.cyp.ac.th/video/

max77

RetrogeneDB - Retrocopy retro_stub_57 details

RetrogeneDB ID:

retro_stub_57

Retrocopy
location
Organism:Potato (Solanum tuberosum)
Coordinates:2:43091845..43094107(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:PGSC0003DMG400024970
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:PGSC0003DMG400014862
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_stub_57
ATGTCTACATACCCAGTTCTAGTTGTTGTACTTGTGTGCCTATGTCACATGTCTGTGGCAATGGAGGAGAAGAAAACATA
CATCATTCACATGGCTAAATCACAAATGCCAGTAACCTTTGATGACCATACTCACTGGTATGACGCGTCCCTCAAATCGG
TTTCTGAATCAGCAGAGATGATCTATGTTTATAAAAACGTTGTTCATGGTTTTGCAGCAAGGCTTACAGCTCAAGAAGCT
GAATCCTTAGAGACCCAACCTGGGATTCTCTCTGTTTTGCCTGAGGTGATATACCAACTCCACACTACTCGGACGCCTCT
TTTTTTGGGTCTTGATAAAAGTGTTAATATCTTTCCTGAGTCAGATTCTATGAGTGATGTCATCGTCGGAGTACTCGATA
CAGGGGTTTGGCCGGAGAGAAAGAGCTTTGACGATACTGGATTTGGACCTGTTCCAGATTCGTGGAAAGGTCAGTGTGAG
TCCAGCACCAATTTCAGTTCTGCCATGTGTAACAGAAAGCTTGTTGGAGCGAGGTATTTTTCTAGGGGTTATGAAACTAC
TCTTGGACCAATTGATGAGTCCAAGGAGTCTAAATCTCCTAGGGATGATGATGGACATGGAACACACACTGCTTCTACAG
CAGCTGGTTCAGTTGTTCAGGGTGCTAGCCTTTTTGGTTATGCTTCAGGAACTGCTCGTGGAATGGCCTATCATGCCAGA
GTTGCCGTGTACAAAGTTTGCTGGCTTGGGGGATGTTTTAACTCTGACATATTGGCAGGGATGGACAAAGCCATTGATGA
TAAAGTTGATGTGCTTTCATTATCACTTGGTGGAAGCACACCAGATTACTACAAAGACAGCATTGCAATTGGAGCTTTTG
CTGCTATGGAGAAGGGTATTTTGGTTTCTTGCTCTGCTGGAAATGCTGGACCTAATCAATTCAGTTTGTCCAACCAAGCA
CCTTGGATCACCACCGTGGGTGCCGGAACAATTGACCGTGATTTTCCAGCATATGTAAGCCTTGGCAATGGTAAAAATTT
CTCCGGCGTTTCACTTTACGCGGGTGATTCATTACTTAATAAGATGCTTCCCTTGGTGTATGCTGGTAATGCCAGCAATG
TAACCAGTGGAAATCTCTGTATGATGGGTACCTTAATTCCTGAGAAAGTTAAAGGCAAAATTGTGCTGTGTGACAGAGGG
ATTAACGCTCGAGTCCAAAAGGGTTTTGTGGTAAAAGCAGCTGGTGGAGCCGGCATGGTTTTGGCTAACACCGCAGCAAA
TGGGGAGGAGCTAGTGGCTGACGCCCATTTACTTCCAGCGGCGGCGGTGGGTCTAATAGCCGGCGATGCAGTCAAGAAAT
ATTTATTCTCCGATCCTAATCCAACGGCCGAAATTCTTATAGGAGGAACAAAGGTAGGAATCCAACCGTCACCGGTTGTT
GCAGCGTTCAGTTCCAGAGGCCCAAATTCAATCACCCCGGAGATACTCAAACCGGATATTATCGCGCCCGGTGTAAACAT
TCTGGCCGGTTGGACCGGAGCCGTCGGCCCGACGGGGATGGCTGAGGACGATAGACGGGTCGAGTTCAACATTATCTCAG
GCACATCCATGTCGTGTCCACATGTGAGTGGCTTAGCGGCTTTGGTAAAAGGAGTCCACCCAGAATGGAGCCCGGCCGCC
ATTCGTTCGGCGCTCATGACCACCGCTTACACCGTCTACAAGAACGGCGGAGCACTACTAGATGTCGCCACGGGAAAGCC
ATCTACACCTTTCGATCACGGCGCTGGACACGTGGATCCCGTTTCGGCGGTGAACCCAGGTCTTGTTTACGACATAAACG
CCGATGATTACCTCAATTTCATGTGTGCATTGAAATACACTCCATCACAAATCAATAGCTTAGCAAGAAGAAACTTCACA
TGTGATTCAAGCAAAAAATACAGCGTCACAGATTTGAATTACCCTTCCTTTGCTGTTTCATTCCCTGCTGATACCGGTTC
AAACACAATCAAGTACAGCCGGACACTGACTAATGTTGGACCAGCTGGGACATACAAAGTTACTGTTTCTTCCCCTAATA
GTTCAGTGAAAATTATAGTTGAGCCTGAAACAGTGAGTTTCACTCAGATTAATGAGAAGAAATCGTATACTGTGAGTTTT
ACTGCTCCATCAAAGTCCTCATCTACGGATGTATTCGGTAGAATTGAGTGGTCAGATGGGAAGCATGTGGTTAGTAGTCC
AGTTGCAATTTCTTGGTCATGA

ORF - retro_stub_57 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 80.8 %
Parental protein coverage: 100.0 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalMAKSQMPEGFEDHTHWYDSSLRSVSASAEMLYVYNNAVHGFAARLTPEEAESLQNQPGILSVLPEMKYEL
MAKSQMP..F.DHTHWYD.SL.SVS.SAEM.YVY.N.VHGFAARLT..EAESL..QPGILSVLPE..Y.L
RetrocopyMAKSQMPVTFDDHTHWYDASLKSVSESAEMIYVYKNVVHGFAARLTAQEAESLETQPGILSVLPEVIYQL
ParentalHTTRTPLFLGLDVSADYFPESNAMGDVIVGVLDTGVWPESKSFDDNGFGPIPASWKGECESGTNFTSKNC
HTTRTPLFLGLD.S...FPES..M.DVIVGVLDTGVWPE.KSFDD.GFGP.P.SWKG.CES.TNF.S..C
RetrocopyHTTRTPLFLGLDKSVNIFPESDSMSDVIVGVLDTGVWPERKSFDDTGFGPVPDSWKGQCESSTNFSSAMC
ParentalNRKLIGARYFAKGYESTLGPIDVSKESKSPRDDDGHGTHTSTTAAGSVVQGASLLGYASGNARGMATHAR
NRKL.GARYF..GYE.TLGPID.SKESKSPRDDDGHGTHT..TAAGSVVQGASL.GYASG.ARGMA.HAR
RetrocopyNRKLVGARYFSRGYETTLGPIDESKESKSPRDDDGHGTHTASTAAGSVVQGASLFGYASGTARGMAYHAR
ParentalVAVYKVCWVGGCFSSDILAGLDKAIDDNVNVLSLSLGGGNSDYYRDSIAIGAFAAMEKGILVSCSAGNAG
VAVYKVCW.GGCF.SDILAG.DKAIDD.V.VLSLSLGG...DYY.DSIAIGAFAAMEKGILVSCSAGNAG
RetrocopyVAVYKVCWLGGCFNSDILAGMDKAIDDKVDVLSLSLGGSTPDYYKDSIAIGAFAAMEKGILVSCSAGNAG
ParentalPSPYSLSNVAPWITTVGAGTLDRDFPAYVSLGNGKNFSGVSLYKGDSSLSKMLPFVYAGNASNMTNGNLC
P...SLSN.APWITTVGAGT.DRDFPAYVSLGNGKNFSGVSLY.GDS.L.KMLP.VYAGNASN.T.GNLC
RetrocopyPNQFSLSNQAPWITTVGAGTIDRDFPAYVSLGNGKNFSGVSLYAGDSLLNKMLPLVYAGNASNVTSGNLC
ParentalMTGTLIPEEVKGKIVLCDRGINPRVQKGSVVKAAGGAGMVLANTAANGDELIADAHLIPATSVGQTTGEA
M.GTLIPE.VKGKIVLCDRGIN.RVQKG.VVKAAGGAGMVLANTAANG.EL.ADAHL.PA..VG...G.A
RetrocopyMMGTLIPEKVKGKIVLCDRGINARVQKGFVVKAAGGAGMVLANTAANGEELVADAHLLPAAAVGLIAGDA
ParentalIKKYLTSDPNPTATILFEGTKVGIKPSPVVAAFSSRGPNSITQEILKPDIIAPGVNILAGWTGAAGPTGL
.KKYL.SDPNPTA.IL..GTKVGI.PSPVVAAFSSRGPNSIT.EILKPDIIAPGVNILAGWTGA.GPTG.
RetrocopyVKKYLFSDPNPTAEILIGGTKVGIQPSPVVAAFSSRGPNSITPEILKPDIIAPGVNILAGWTGAVGPTGM
ParentalAEDDRRVEFNIISGTSMSCPHVSGLAALLKGAHPDWSPAAIRSALMTTAYTVYKKGGALQDVVTGKPSTP
AEDDRRVEFNIISGTSMSCPHVSGLAAL.KG.HP.WSPAAIRSALMTTAYTVYK.GGAL.DV.TGKPSTP
RetrocopyAEDDRRVEFNIISGTSMSCPHVSGLAALVKGVHPEWSPAAIRSALMTTAYTVYKNGGALLDVATGKPSTP
ParentalFDHGAGHVDPVAALNPGLVYDLKADDYLNFLCALNYTSIQINSVARRPFSCETSKKFSVADLNYPSFAVV
FDHGAGHVDPV.A.NPGLVYD..ADDYLNF.CAL.YT..QINS.ARR.F.C..SKK.SV.DLNYPSFAV.
RetrocopyFDHGAGHVDPVSAVNPGLVYDINADDYLNFMCALKYTPSQINSLARRNFTCDSSKKYSVTDLNYPSFAVS
ParentalFPEQMTASSGSGSSSIKHTRTLTNVGPAGTYKVNVISPSNSVKVVVEPEILAFTRMNEQKSYTVTFTAPS
FP....A..GS....IK..RTLTNVGPAGTYKV.V.SP..SVK..VEPE...FT..NE.KSYTV.FTAPS
RetrocopyFP----ADTGS--NTIKYSRTLTNVGPAGTYKVTVSSPNSSVKIIVEPETVSFTQINEKKSYTVSFTAPS
ParentalMPSTENVYARIEWSDGKHIVSSPVAISWT
..S...V..RIEWSDGKH.VSSPVAISW.
RetrocopyKSSSTDVFGRIEWSDGKHVVSSPVAISWS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Solanum tuberosum was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Solanum tuberosum was not studied using ChIP-Seq data.

EST - click to see more details

Solanum tuberosum was not studied using EST data.

TSS - click to see more details

Solanum tuberosum was not studied using FANTOM5 data.

Lab - click to see more details

retro_stub_57 was not experimentally validated.

Retrocopy orthology:
Solanum tuberosum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species Parental gene accession Retrocopies number
Solanum tuberosum PGSC0003DMG400014862 2 retrocopies
retro_stub_57 , retro_stub_9,
Solanum lycopersicum Solyc03g044150.21 retrocopy
retro_slyc_26,


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