slot maxwin

slot resmi

indohoki77

pgwin88

789betwin

ufabet

pgwin88

baht89

https://rr.lpsh.net/amp

ufabetwin

https://brss.pattani1.go.th/video/

https://sp.moe.go.th/web_sp_68/book/

https://dol-bangkok.com/video/

ufabetwin

okvip

okvip

https://aicode.cyp.ac.th/video/

max77

RetrogeneDB - Retrocopy retro_stub_52 details

RetrogeneDB ID:

retro_stub_52

Retrocopy
location
Organism:Potato (Solanum tuberosum)
Coordinates:4:36586190..36586985(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:PGSC0003DMG400020916
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:PGSC0003DMG400010119
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_stub_52
ATGGTTGCACCAACTAGAGGTCGTGGTGGTGGTGGATTCATGGGCGGTAGAGGGGATTGTGGAGGAAGAGGAGGAAGAGG
TGGAAAAGGTGGTTTCAGTGGTGGAAGAGGGGGTTTTCGAAGTGGAGGAAATGTGATGAAGCGAGGAGGTGGAAGAGGTG
GAGGAAGGGGACGTGGAGGAATGAAGGGTGGTAGTAAGGTTGTGGTGGAGCCTCATAGACATGGAGGCATGTTCACTGCT
AAGTGTAAGGACGATGCTCTTTGTACTAAGAATTTGGTACCTGGTGAAGCTGTCTACAACGAAAAAAGAATCTTTGTTCA
GAATGAAGATGGAACAAAGGTTGAATACAGACTGTGGAATCCTTTCCGTTCTAATTTAGTACCTGCATTTCTTGGAGGAG
TTTATGACATATGGATTAAACCAGGTGCTCGTGTCCTTTTCCTGGTTGCTGCTTCCGGAAAAAAAGTATCTCATGTCTCA
GACATTGTTGGTCCTGATGGGGTTGTATATGCTGTTAAATTTTCTCACAGAAGTGGAAGGGACTTGGTTTACATGGCTAA
GAAATGTACTAATGTTATTCCCATTATCGAGGATGCTAAACACCCATCGAAATACAAAATGTTGGTTGGAATGGTGGATC
TGATATTTTCTGATGTTGCTCAGCCTGATCAGGCAAGAATTTTAGTTCTGAATGCATCATACTTCTTGAATGTTGGGGGT
CACTTTGTTATCTCAATCAAGGCAAACTGTATTGTTCAACAATGCCAGCGGAAGTCATATTTTCTAAGGAAGTGA

ORF - retro_stub_52 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.92 %
Parental protein coverage: 82.8 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalRGGRGDGGGRGGRGGRGGFSGGRGGFGSGGSGMKRGGGRGGRGDRGGRGGGRGRGGMKGGSRVVVEPHRH
RGG.G..GGRG..GGRGG..GG.GGF..G..G...GG....RG..GGRGGGRGRGGMKGGS.VVVEPHRH
RetrocopyRGGGGFMGGRGDCGGRGG-RGGKGGFSGGRGGFRSGGNVMKRG--GGRGGGRGRGGMKGGSKVVVEPHRH
ParentalGGVFIAKGKEDALCTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSKLAAAILGGVDDIWIKPGAR
GG.F.AK.K.DALCTKNLVPGEAVYNEKRI.VQNEDGTKVEYR.WNPFRS.L..A.LGGV.DIWIKPGAR
RetrocopyGGMFTAKCKDDALCTKNLVPGEAVYNEKRIFVQNEDGTKVEYRLWNPFRSNLVPAFLGGVYDIWIKPGAR
ParentalVLYLGAASGTTVSHVSDLVGPDGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDV
VL.L.AASG..VSHVSD.VGPDGVVYAV.FSHRSGRDLV.MAKK.TNVIPIIEDA.HP.KY.MLVGMVD.
RetrocopyVLFLVAASGKKVSHVSDIVGPDGVVYAVKFSHRSGRDLVYMAKKCTNVIPIIEDAKHPSKYKMLVGMVDL
ParentalIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFAQE
IFSDVAQPDQARIL.LNASYFL..GGHFVISIKANCI.........F...
RetrocopyIFSDVAQPDQARILVLNASYFLNVGGHFVISIKANCIVQQCQRKSYFLRK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Solanum tuberosum was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Solanum tuberosum was not studied using ChIP-Seq data.

EST - click to see more details

Solanum tuberosum was not studied using EST data.

TSS - click to see more details

Solanum tuberosum was not studied using FANTOM5 data.

Lab - click to see more details

retro_stub_52 was not experimentally validated.

Retrocopy orthology:
Solanum tuberosum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Solanum tuberosum PGSC0003DMG400010119 1 retrocopy
retro_stub_52 ,


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