pgwin88

789betwin

ufabet

pgwin88

baht89

https://rr.lpsh.net/amp

ufabetwin

https://brss.pattani1.go.th/video/

https://sp.moe.go.th/web_sp_68/book/

https://dol-bangkok.com/video/

ufabetwin

okvip

okvip

https://aicode.cyp.ac.th/video/

max77

RetrogeneDB - Retrocopy retro_stub_5 details

RetrogeneDB ID:

retro_stub_5

Retrocopy
location
Organism:Potato (Solanum tuberosum)
Coordinates:4:46508951..46509821(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:PGSC0003DMG401028714
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:PGSC0003DMG400012286
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_stub_5
ATGGCTGATGCATTTGAAGAGGATGCTGAGAATACTGTTTCAATTGGAGAGTTTCTCGAAGAACAGGAACTGGAGGAAGA
TTTGGTCTTAGGTGGTGATGAAGGCAAGGAGTGCACCTATAGTAAAGGTTATATAAAGAGACATGCTATTTTTTCTTGTT
TGACATGCACACCAGATGGGAATGTTGGAGTATGCACAGCTTGTAGCCTCTCTTGCCATGATGCTCATGAGATTTTGGAA
CTTTGGACGAAGAGAAACTTCAGGTGTGACTATGGAAATTCAAAGTTCGGGGAGTTCTTCTGCAAGCTTGATGCTAGCAA
AGATGTTGAAAGCACGAAGAATACATATAATCACAATTTCAAAGGTTCATACTACACATGTGGCCGGCCATATCCTGATC
ATGATGTTGAAGACCAATTGGAGAATCTCCAATGCTGCATCTGTGAGGACTGGTTTCATGAGGAGCATATTGGTCTTGAG
TCCTCTGATATGGTTCCAAGGGATGCCAAAGGGGAGCCTCAATTTGAGGATTTTATCTGCCAGGGGTGCGCAACTGTTTG
TTCTTTTTTAAAGCTATATCCTGATTCTATCTTTGCACCAGTCCAGCAGCAGACTACTACAAATTCCTCAAGGGACAAGG
AGGTGGTTGAAGATGCACCCTTGACTGTGGGATCTTCTAAGGAACTTAGCAATGAAAGTTCCTCAGTTGAGACTCCTATA
ACCGATAATAATCCTAAAGAAGACTGCAACAGAAAGGTTCTTCTTCTTGGAGAAAATGCCACAACAAACACACTCCTTAA
TCAGCGTAACACAGTTATTGGTCCTAATACCAAATTGCTGGTCCTAGTACCAAATGTGTTGTTGGACTGA

ORF - retro_stub_5 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.03 %
Parental protein coverage: 68.52 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalMADAFEEDGENTVSIGEFLQDLEEQELEADLVLGGDEGKECTYSKGYMKRQAIFSCLTCTPNGNAGVCTA
MADAFEED.ENTVSIGEF...LEEQELE.DLVLGGDEGKECTYSKGY.KR.AIFSCLTCTP.GN.GVCTA
RetrocopyMADAFEEDAENTVSIGEF---LEEQELEEDLVLGGDEGKECTYSKGYIKRHAIFSCLTCTPDGNVGVCTA
ParentalCSLSCHDGHEILELWTKRNFRCDCGNSKFGEFFCKLDASKDVENTKNSYNHNFKGSYCTCGRPYPDPDVE
CSLSCHD.HEILELWTKRNFRCD.GNSKFGEFFCKLDASKDVE.TKN.YNHNFKGSY.TCGRPYPD.DVE
RetrocopyCSLSCHDAHEILELWTKRNFRCDYGNSKFGEFFCKLDASKDVESTKNTYNHNFKGSYYTCGRPYPDHDVE
ParentalDQLENLQCCICEDWFHEEHLGLESSDMVPRDDKGEPQFEDLICQGCATVCSFLKLYPDSIFAPVQQQTTT
DQLENLQCCICEDWFHEEH.GLESSDMVPRD.KGEPQFED.ICQGCATVCSFLKLYPDSIFAPVQQQTTT
RetrocopyDQLENLQCCICEDWFHEEHIGLESSDMVPRDAKGEPQFEDFICQGCATVCSFLKLYPDSIFAPVQQQTTT
ParentalNASKDKEVVEEAPLTVGSSKELSNGSSSVETPVTDNSPKEDCNGKA-VLGENAATNTLLNQCNTVAGPST
N.S.DKEVVE.APLTVGSSKELSN.SSSVETP.TDN.PKEDCN.K...LGENA.TNTLLNQ.NTV.GP.T
RetrocopyNSSRDKEVVEDAPLTVGSSKELSNESSSVETPITDNNPKEDCNRKVLLLGENATTNTLLNQRNTVIGPNT
ParentalKCVV
K..V
RetrocopyKLLV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Solanum tuberosum was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Solanum tuberosum was not studied using ChIP-Seq data.

EST - click to see more details

Solanum tuberosum was not studied using EST data.

TSS - click to see more details

Solanum tuberosum was not studied using FANTOM5 data.

Lab - click to see more details

retro_stub_5 was not experimentally validated.

Retrocopy orthology:
Solanum tuberosum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Solanum tuberosum PGSC0003DMG400012286 1 retrocopy
retro_stub_5 ,


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