RetrogeneDB ID: | retro_stub_32 | ||
Retrocopy location | Organism: | Potato (Solanum tuberosum) | |
| Coordinates: | 12:36293045..36293438(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | PGSC0003DMG400039969 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | PGSC0003DMG400037766 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_stub_32
ATGAATACACGAAGGTGTAATACTAGAAGGGTGGAAGAGGAAAATGTTAATGAAGAAGCTCCTGAAGCTAATCAAGCTCC
AATTAATCCTTCAGCTATGTCGGATATGGAGGTTAGGTCGGCTTTTAAAATGTTGGCCCAAGCTATGATGACCCAAGCTC
AAGCTTTGACTACTCAAGCTCGAGCAGTGACATCTCATGCCAATAGAGGTGTTGTGACTCATGTGAATTTGGCTGCTTTA
AGGGTTAGGGATTTTTCTAGAATGAACCCTCCCAAATTTCATGGATCCAAAGTGGAAGAGGATCCCCAAAGGTTGATTGA
TAAGTTTTATAAAGTACATGATGTTATTCGAATGTCTCCACAAGAGAAGGCGGAGTTGGCCACCTACCAATAG
ORF - retro_stub_32 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 52.67 % |
| Parental protein coverage: | 76.97 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MNKRRANARRMESDNVNEEAPQANQAPINPSVMPDVEVRDSLGYEKQVKDEIKGGVTAQTNRDVVTHVNP |
| MN.RR.N.RR.E..NVNEEAP.ANQAPINPS.M.D.EVR.......Q.........T.Q..R.V..H.N. | |
| Retrocopy | MNTRRCNTRRVEEENVNEEAPEANQAPINPSAMSDMEVRSAFKMLAQAMMTQAQALTTQA-RAVTSHANR |
| Parental | NVKS----VASNVRDFSRMNPLKFYGSKVEEDPQRFTDILYKVLSIMCVSSEQKEALAAYQ |
| .V.......A..VRDFSRMNP.KF.GSKVEEDPQR..D..YKV......S...K..LA.YQ | |
| Retrocopy | GVVTHVNLAALRVRDFSRMNPPKFHGSKVEEDPQRLIDKFYKVHDVIRMSPQEKAELATYQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Solanum tuberosum was not studied using RNA-Seq expression data.
Solanum tuberosum was not studied using ChIP-Seq data.
Solanum tuberosum was not studied using EST data.
Solanum tuberosum was not studied using FANTOM5 data.
retro_stub_32 was not experimentally validated.
Retrocopy orthology:
Solanum tuberosum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Solanum tuberosum | PGSC0003DMG400037766 | 1 retrocopy |
retro_stub_32 ,
|