slot maxwin

slot resmi

indohoki77

pgwin88

789betwin

ufabet

pgwin88

baht89

https://rr.lpsh.net/amp

ufabetwin

https://brss.pattani1.go.th/video/

https://sp.moe.go.th/web_sp_68/book/

https://dol-bangkok.com/video/

ufabetwin

okvip

okvip

https://aicode.cyp.ac.th/video/

max77

RetrogeneDB - Retrocopy retro_stub_11 details

RetrogeneDB ID:

retro_stub_11

Retrocopy
location
Organism:Potato (Solanum tuberosum)
Coordinates:10:31220108..31222295(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:PGSC0003DMG400026783
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:PGSC0003DMG400012332
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_stub_11
ATGGGCGTAGGAGAAAAGGGTCAGCCCCGCAAGAAGATTAAACCTACAATTACTGAAGTTGAAGTTGAAGATGAAGATGA
AGATGAATTCGGAGGAGAATTAATGAATGATTTTACAAAGTTGGAGCTCAAACCTGATCATGAAAATCGTCCATTATGGG
TGTGTTGTGACGGTCGTGTTTTCCTCGAAACATCTTCTCCTATTTACCACCAAGCTTCTGATTTCCTTATAGCTATTGCT
GAACCTGTTTCCCGCCCTAATTCCATTCATGAATACAACCTTACCCCTCACTCTCTTTACGCTGCTGTTTCTGTAAGTCT
ACAAACTCATACTATCATCTCTGTTCTCAACAAATTATCAAAAACTAACCTTCCGAAAGAGGTGGTTGATTTTATTCAAT
CTTCCACCTCTAATTATGGTAAAGTAAAACTAGTCCTCAAGAAAAATCGTTACTTCATCGAATCACCATGCCCGTTAGTA
TTGAAAACGTTGCTTAAGGATGATGTAATATCTCGAGCACGAATCGCAAATACAATTGAAGAAGAGGAGGCTGAATATTC
CTTTGAAATTGACCCTGCGCAAGTTGAAAGTGTAAAGCAACGTTGCTTACCGAATGCCTTAAATTATCCTATGTTGGAAG
AGTACGATTTCAGGAACGATACTGTAAATCCTGATTTGGATATAGAGTTGAAAATTAACGCTCAGCCACGGCCTTATCAA
GTGAAGAGTCTTAGTAAGATGTTTGGGAATGGGAGAGCTAGGTCTGGTATTATCGTGCTTCCGTGTGGTGCAGGCAAATC
GTTGGTTGGTGTTTCAGCAGCTACTAGAATTAATAAGAGCTGTCTTTGTTTAGCTACAAATGCAGTATCTGTTGATCAGT
GGGCTTACCAATTCCGTCTTTGGTCTACCATTCGAGATGATCAAATATGTCGTTTCACTACTGACAGTAAGGAGCAATTT
CGCGGGGATGCTGGAGTTGTGGTGACGACTTATAACATGGTTGCTTTTGGAGGGAAACGTTCTGAAGAATCTGAGAAGCT
TATTGAACAAATACGAAACAGAGAATGGGGATTGCTTCTGTTAGATGAGGTTCATGTAGTTCCTGCACAGATGTTTAGGA
AAGTCATCAGCATCACAAAATCTCACTGCAAACTTGGACTTACTGCCACATTGGTTAGGGAAGACGAAAGGATTACCGAT
TTGAATTTCCTTATCGGTCCTAAGTTGTACGAGGCTAATTGGTCTGATTTAGCCAAAGGAGGATTTATTGCAAATGTGCA
GTGTGCTGAAGTTTGGTGTCCCATGACTAAGGAGTTTTTTGCTGAGTATTTGAAACAGGAAAATCATAGGAAGAGGAAGG
CATTGTACGTAATGAATCCTAATAAATTCAGGGCTTGTGAGTTTCTCATCAGGTTCCACGAGCAGCAGCGTGATGACAAG
ATCATAGTGTTTTCTGACAACTTGTTTGCATTGACAGAGTATTCAATGAGGCTTCGGAAGCCTATGATCTATGGTTGTAC
CAGCCACGCCGAGAGAATGAAAATTCTCGAGGCATTTAGAACTAATCCTGAAGTGAACACCATTTTTCTTTCAAAAGTGG
GTGACAACTCCATAGACATCCCTGAAGCAAATGTGATCATTCAAATTTCGTCCCATGCTGGTTCAAGGCGCCAAGAGGCA
CAACGACTAGGCCGTATACTCAGGGCAAAGAGGGCGCGCCTTCAAGGGGGATCAAAGACAGAGGAATACGATGCCTTCTT
TTACTCACTTGTATCCACTGATACACAAGAAATGTACTACTCAACAAAGAGACAGCAATTCCTGATTGATCAAGGTTACA
GCTTTAAGGTGATCACAAACTTGCCTCCACCAGACTCAGGGCCTGAGTTGAGTTATTACCATGTAGGCGAACAGCTTGAG
CTTCTTGGGAGGGTACTTAGTGCTGGCGATGATATAGTTGGTATGGAAGAAACAGAAGAAGAAGAAGAAGACTCCGATGG
AAAAGTCGCTAGTAGAGAAAATCGTACAGTGGGATCAATGAGTACTTATTCAGGAGCCAAAGAAATTATCTATATGGAAT
ACAGTGGAGGGCAGAAGAAACCTGGAGCTGGAGGAGTTGTCCAGACAAAGAGCAAGCCCAAGGATTTGTCCAAGAGACAC
GTTTTGTTCAAAAAACGCTACGTCTAA

ORF - retro_stub_11 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.92 %
Parental protein coverage: 71.82 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalDELINEVDVAAAAEEKET-HSFEIDPAQVENVKQRCLPNALNYPMMEEYDFRNDTVNPDLDMELKPQAQP
D..I.....A...EE.E...SFEIDPAQVE.VKQRCLPNALNYPM.EEYDFRNDTVNPDLD.ELK..AQP
RetrocopyDDVISRARIANTIEEEEAEYSFEIDPAQVESVKQRCLPNALNYPMLEEYDFRNDTVNPDLDIELKINAQP
ParentalRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAASRIKKSCLCLATNAVSVDQWAFQFKLWSTIRE
RPYQ.KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA.RI.KSCLCLATNAVSVDQWA.QF.LWSTIR.
RetrocopyRPYQVKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAATRINKSCLCLATNAVSVDQWAYQFRLWSTIRD
ParentalEQICRFTSDSKERFRGNVGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI
.QICRFT.DSKE.FRG..GVVVTTYNMVAFGGKRSEESEK.IE.IRNREWGLLL.DEVHVVPA.MFRKVI
RetrocopyDQICRFTTDSKEQFRGDAGVVVTTYNMVAFGGKRSEESEKLIEQIRNREWGLLLLDEVHVVPAQMFRKVI
ParentalSITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKK
SITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW.DL.KGGFIANVQCAEVWCPMTKEFFAEYLK.
RetrocopySITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWSDLAKGGFIANVQCAEVWCPMTKEFFAEYLKQ
ParentalENSKKRQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALVEYAMKLRKPMIYGATSHVERTKIL
EN..KR.ALYVMNPNKFRACEFLIRFHEQQR.DKIIVF.DNLFAL.EY.M.LRKPMIYG.TSH.ER.KIL
RetrocopyENHRKRKALYVMNPNKFRACEFLIRFHEQQRDDKIIVFSDNLFALTEYSMRLRKPMIYGCTSHAERMKIL
ParentalEAFKTSKEVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGK--EEY
EAF.T..EVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK.....R..GG...EEY
RetrocopyEAFRTNPEVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK---RARLQGGSKTEEY
ParentalNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDSGSELSYHRLDDQLQLLGKVLSAGDDAV
.AFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVIT.LPP.DSG.ELSY.....QL.LLG.VLSAGDD.V
RetrocopyDAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITNLPPPDSGPELSYYHVGEQLELLGRVLSAGDDIV
ParentalGLEQLDE---DADDVALQKARRYMGSMSAMSGAKGMVYMEY
G.E...E...D.D........R..GSMS..SGAK...YMEY
RetrocopyGMEETEEEEEDSDGKVASRENRTVGSMSTYSGAKEIIYMEY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Solanum tuberosum was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Solanum tuberosum was not studied using ChIP-Seq data.

EST - click to see more details

Solanum tuberosum was not studied using EST data.

TSS - click to see more details

Solanum tuberosum was not studied using FANTOM5 data.

Lab - click to see more details

retro_stub_11 was not experimentally validated.

Retrocopy orthology:
Solanum tuberosum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Solanum tuberosum PGSC0003DMG400012332 1 retrocopy
retro_stub_11 ,


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