slot maxwin

slot resmi

indohoki77

pgwin88

789betwin

ufabet

pgwin88

baht89

https://rr.lpsh.net/amp

ufabetwin

https://brss.pattani1.go.th/video/

https://sp.moe.go.th/web_sp_68/book/

https://dol-bangkok.com/video/

ufabetwin

okvip

okvip

https://aicode.cyp.ac.th/video/

max77

RetrogeneDB - Retrocopy retro_stub_1 details

RetrogeneDB ID:

retro_stub_1

Retrocopy
location
Organism:Potato (Solanum tuberosum)
Coordinates:7:41319974..41321435(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:PGSC0003DMG400034632
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:PGSC0003DMG400015327
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_stub_1
ATGGAGTCAGTAAACAAGAAAACAGAGTTGGTTTTCATTCCTGTTCCTGGTATGGGCCACCTAGTACCCACACTTGAGAT
GGCAAAGGTTCTAATAGCTAGAGATGAACATCTCGTCATTACAGTCCTCGTAATCAAGCTGCCTTCTGACAACATGCTCA
GCTCCTATATTGAATCAGTCTCGACAAATCCAAACTACAACTCTCAAATGAAGTTCATTGAACTCCCTCAATATGAGTCC
ATCTTACAGTCAATCACAAACACAACTTTCATCACATTTTTATCCAGTCAAAAGCCTCAAGTCAGAAATTCTGTGATTGA
AATCTTGAATTCAGGATCAAATCGTCTTGCGGGCCTTGTTATTGACATGATGTGTACAGCAATGATAGACGTGGCCAATG
AATTTGGCCTCCCGACTTATGTTTTCTACACGTCTGGTGCTGCCATGCTTGGTCTTCAGCTTCATTTGCAGACTCTCAGG
GATGATTTTAACCAAGACGTGACAGAATACAAGGATGATCCAGAAGCAGAGCTTTCGGTGACAACGTATGGAAACCCATT
TCCAGCTAAATGTTTGCCATCTATAGCCTTTGACAAGGATGGTGGTTCCACAATGTACCTTGATCTTTCTAAAAGGCTTC
GAGAAGCTAAAGCTATCCTAGTCAACACTTTCTCCGAATTCGAATCTCATGCTGTCAAATCCCTCTCCCTCGATGAGAAA
ATCCCACTTGTATACCCAGTCGGACCTTTGCTAAACCTTGATAACGATCACGGTAACAATCAAGATTCTTCTCAACATCA
AACTATAATCAACTGGTTAGATGATCAACCCGATTCATCAGTAGTGTACCTCTGCTTTGGAAGCTTAGGAAGTTTCAACG
AGGAGCAAATAAAGGAAATTGCATATGCTTTGGAGAAGAGCGGATGTCGATTCTTGTGGTCCCTAAAGAAGCCTTTGGCT
AAAGATACATTTTTTCCAGCTGCTTATGATAATCCAGAAGATGTTTTGCCTGAGGGGTTCTTGCAAAGGACAGAAGCGAT
TGGGAAGGTGATAGGATGGGCACCCCAGGTGGCTATCTTGAGTCATGATGCTGTAGGTGGCTTTGTGTCACACTGTGGGT
GGAATTTGACTTTAGAGAGCATTTGGTTCGGAGTACCACTGGCAACTTGGCCAATATATTCGGAGCAGCAAGCGAATGCA
TTTCAATTGGTGAAGGATTTAGAGATAGCAGTGGAGATTAAGATGGATTATAGGAAGGATCTCAGGGGGACCGAATCGAA
CGTTATAGTAAAAGCAGAGGAGATAGAGAAAGCAATAAAGCAGTTGATAGATCCTGAAAATGAAATAAGGTTGAAAGTGA
AGGACATGAAGGAGAAGAGCAGATTGGCGCTAAAAGAATGTGGCTCTTCGTACAACTCTGTTGGACATTTTATCGAGCAG
GTGATGGACAAAACTAAGTAA

ORF - retro_stub_1 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 64.94 %
Parental protein coverage: 100.0 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalMAKLLITREKNMSITVLIIQSPHDNKLPSYIQSLT---NFSSSLKFIQLPQDDTVLQLRKSNLFTSFIPA
MAK.LI.R.....ITVL.I..P.DN.L.SYI.S.....N..S..KFI.LPQ....LQ......F..F...
RetrocopyMAKVLIARDEHLVITVLVIKLPSDNMLSSYIESVSTNPNYNSQMKFIELPQYESILQSITNTTFITFLSS
ParentalHKPAVRDVVAEIIKSQSNITLAGIVIDLFCTSMIDVANEFELPTYVFYTCGAAPLGLQFHMQSLSDDFGR
.KP.VR..V.EI..S.SN..LAG.VID..CT.MIDVANEF.LPTYVFYT.GAA.LGLQ.H.Q.L.DDF..
RetrocopyQKPQVRNSVIEILNSGSN-RLAGLVIDMMCTAMIDVANEFGLPTYVFYTSGAAMLGLQLHLQTLRDDFNQ
ParentalNITNYKDDPEAELSISTYFNPFPAKCLPSVMLDKEGGSTMCLDLTRRFRETKGIMINTFLELDSHAINSL
..T.YKDDPEAELS..TY.NPFPAKCLPS...DK.GGSTM.LDL..R.RE.K.I..NTF.E..SHA..SL
RetrocopyDVTEYKDDPEAELSVTTYGNPFPAKCLPSIAFDKDGGSTMYLDLSKRLREAKAILVNTFSEFESHAVKSL
ParentalSRDKNIPPVYPVGPVFNLNSVQGENLSSSD-QNIMKWLDDQPPSSVVFLCFGSGGSFTVEQVKEITYALE
S.D..IP.VYPVGP..NL....G.N..SS..Q.I..WLDDQP.SSVV.LCFGS.GSF..EQ.KEI.YALE
RetrocopySLDEKIPLVYPVGPLLNLDNDHGNNQDSSQHQTIINWLDDQPDSSVVYLCFGSLGSFNEEQIKEIAYALE
ParentalNSGCRFLWTLRQPPQKDARLPGDYENFEEVLPEGFLQRTQGIGKVIGWAPQLAILSHRAVGGFVSHCGWN
.SGCRFLW.L..P..KD...P..Y.N.E.VLPEGFLQRT..IGKVIGWAPQ.AILSH.AVGGFVSHCGWN
RetrocopyKSGCRFLWSLKKPLAKDTFFPAAYDNPEDVLPEGFLQRTEAIGKVIGWAPQVAILSHDAVGGFVSHCGWN
ParentalSTLESIYFGVPMATWPMYAEQQANAFQLVKDLEMAVEIKMDYRKEPTGTMGQEVIVKAEEIEKAIRELMD
.TLESI.FGVP.ATWP.Y.EQQANAFQLVKDLE.AVEIKMDYRK...GT....VIVKAEEIEKAI..L.D
RetrocopyLTLESIWFGVPLATWPIYSEQQANAFQLVKDLEIAVEIKMDYRKDLRGT-ESNVIVKAEEIEKAIKQLID
ParentalPENKIRMKVREMKEKSRATTMEGGSSYTSIGGFIQSIMENTQ
PEN.IR.KV..MKEKSR....E.GSSY.S.G.FI...M..T.
RetrocopyPENEIRLKVKDMKEKSRLALKECGSSYNSVGHFIEQVMDKTK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Solanum tuberosum was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Solanum tuberosum was not studied using ChIP-Seq data.

EST - click to see more details

Solanum tuberosum was not studied using EST data.

TSS - click to see more details

Solanum tuberosum was not studied using FANTOM5 data.

Lab - click to see more details

retro_stub_1 was not experimentally validated.

Retrocopy orthology:
Solanum tuberosum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Solanum tuberosum PGSC0003DMG400015327 1 retrocopy
retro_stub_1 ,


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