RetrogeneDB ID: | retro_shar_749 | ||
Retrocopy location | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
| Coordinates: | GL861809.1:281352..281727(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSSHAG00000006978 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_shar_749
TTAGGGATTTTGTTTATTCCCACAGGTCGTATAGCTGCAAGAGTCACCCAGATCCCCAGACACTTGCTCACAAGGAAGAA
CCAGAATGTGACCCTGAGATGTGATCCCATTCCTTCACACACTGCCCTATTCTGGTACCATCAGACTCAAGGTCGAGAGC
TGGAGTTTCTCTTTTACTTGAGGAACAATGAAATGGTGGAGGAGGCAAAGTTATTGTTCTTGAAGGGATATTCAACTAAA
TGGCCCAAACAGTCCTTCTCCAGCCTGAAAATTCACTCCCTGGAGCCAGAGGACTCAGCCTTGTTATTCTGTGCTAGCAG
TTTATACACAGTGTTACAGAGTCATCTCATCTCTGCATGTAAATGTTCATACATT
ORF - retro_shar_749 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 68.25 % |
| Parental protein coverage: | 94.03 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | VAICLIGVGHMDTGVIQHPNFLVKSKKGQNVTLKCDPIPSHTALFWYRQTQSQELEFLFFFQNNAEMLKS |
| ..I..I..G.....V.Q.P..L....K.QNVTL.CDPIPSHTALFWY.QTQ..ELEFLF...NN...... | |
| Retrocopy | LGILFIPTGRIAARVTQIPRHLL-TRKNQNVTLRCDPIPSHTALFWYHQTQGRELEFLFYLRNNEMVEEA |
| Parental | ELLFAKRYSTKWPKQSFSSLKIHSLESEDSALLFCASSLYTVLQNHLISVCKSSYI |
| .LLF.K.YSTKWPKQSFSSLKIHSLE.EDSALLFCASSLYTVLQ.HLIS.CK.SYI | |
| Retrocopy | KLLFLKGYSTKWPKQSFSSLKIHSLEPEDSALLFCASSLYTVLQSHLISACKCSYI |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Sarcophilus harrisii was not studied using RNA-Seq expression data.
Sarcophilus harrisii was not studied using ChIP-Seq data.
Sarcophilus harrisii was not studied using EST data.
Sarcophilus harrisii was not studied using FANTOM5 data.
retro_shar_749 was not experimentally validated.
Retrocopy orthology:
Sarcophilus harrisii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Sarcophilus harrisii | ENSSHAG00000006978 | 1 retrocopy |
retro_shar_749 ,
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