RetrogeneDB ID: | retro_shar_73 | ||
Retrocopy location | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
| Coordinates: | GL834710.1:4664761..4667938(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSSHAG00000018917 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ATP2B2 | ||
| Ensembl ID: | ENSSHAG00000017272 | ||
| Aliases: | None | ||
| Description: | ATPase, Ca++ transporting, plasma membrane 2 [Source:HGNC Symbol;Acc:815] |
Retrocopy-Parental alignment summary:
>retro_shar_73
GTGAGCTTAAGAGACCTGGAGCAGCTGATGAAACTACGGAGCTTGGAAGCGCTGGAGAGACTGGAGGGGCACTTCGGAGA
CGTGTCGGGGCTGTGTCTGCAGCTGCAGACGGACCCCGAGCTCGGACTCCCCTTAGATCCCGGCGAGCTAAACCGCAGGC
GGGAGCAGTTTGGCACCAATGAGGTGCCCAAGCCCCGGAGCAGATATTTCTTGGAGCTGGTGTGGGACGCTCTGCAGAAC
ACTACTCTAATCTTTCTGGAGGTGGCAGCTGTCCTGTCGCTGGCCCTGGCCTTCTATGAGCCCAAGGTCAGCGGAGACAC
CAAAGGCTGCTATGTCGGCGGGGTCTCCCCGGAGGAAGAGGATAACAAGGTGGTGCGCTGGCTGGAAGGCGCAGTCCTGC
TGATGTCGGTGGCCTTGGTAGTGCTCATCACAGCCTTACACGACTGGAACAAGGAGAAGCAGTTCAGGAATCTGGAGGAG
GGAGTGAGCCTGAGTCAGAAGGGCAAAGTGATGAGGAATGGCCAGATCCTGGAGGTCCCCGTCAAGGACATCGTGGTGGG
TGACGTGGTCCCGGTGTCCTATGGGGACATGCTGCCTGCGGACGGTGTGCTGCTCCAGGTGCAGAACTTAAAAATGAATG
AGAGCTCCTTGACTGGAGAGTTGAACATGGTGAGGAAGTCCCTGGATCTTGACCCAATTCTTCTGTCTGGGACCTATGTG
ATGGAGGGCTGGGGCAAAATCCTCGTGACTGCTGTAGGGCCCAACTCACAAATTGGGATCATCCTGACTTTGCTCGCTGC
CAATGCTCAGGAAGGAAGGCCGGAAGAGCAGAGAAAGGTTCCGGAGTGGGCCATTCACGGCAAGAGCATAATAAAACCTA
AACATTACTCCTCCAAAGCAAAGTCCGTGCTGCAAAAGAAACTGACAAAATTAGCCATTCTGCTCGGGAAGTGCGGAATG
CTCATGGCCACAGTCACAGTGATTACTCTTGTGACCTATTTTGTGATTAACACTTTTGTGATTGAGAGGCAAAAATGGAC
TTATGGTTGTACTTCGGTTTATATCCAATACTTTATTAAATTTTTCATTATTGGAATAACAATCTTGGTGGTGACTGTCC
CTGAAAGTCTTCCACTTGCAGTTACACTATCTTTGGCTTACGCAGTAAAGAAAATGATGAAAGACAAAAATCTGGTAAGG
CATTTGGATGCTTGTGAGACAATTGGAAATGTCACAACCATTTGCTTAGACAAAACTGGAACACTGACCATGAACAGAAT
GACTGTGGTCCAGGCTTATATTGGGGAGAATCATTACCAAGAGCTCCCCAAAAGCAATTCCATCCCAGAGCCTATTCTGG
GGTACCTTTTAAAAGGTATCGCTGTTAATTGTTCTTATTCTTCCAAGGTCATTTTCCCCAAAGATGGTAAGAAGTTGGTA
CAACAAATTGGCAATAAGACCGAATGTGCTTTATTGGGATTTCTTCTGCATTTGGAATTGGATTATGAGGCAGAAAGAAA
CAAAATACCACAGCAGAATTTGTATAAGGTATATACCTTTAACTCAGATAGAAAATGCATGAGTACTGTATTAAAATTGC
CCAATGGGGGTTTCCAGATGTTCAGTAAAGGTCCTTCAGAAACAGTATTAGATAAGTGTTGTAAAATCCTGAACAAAATG
GGAAAGCCTGTGGAACTGACAGAAACCAAAAAAAGAGAAATTGTTCAAAATGTCATCGAGCCAATGAGTTCTGAAGGACT
TCAGATCATTTGTTTGGCCTTCAGAGAATTCTCAGATAAAGAAAAAGAACCAGACTGGGAAACTGAAGAGAATATCATCA
CAAAACTTACTTGCATTGCCGTGGTGGGCATTGAAGATCCTGTTAGACCTGAGATTCCAAGTGCCATTAGGAAATGCCAG
CAAGCTGGAATCACTGTCCGAATGATCACTGGGGATAATCTCAATACCGCACGGGCTGTAGCATTGAAATGTGGCATTTT
GAACCTCCGTGACAATTATTTGTCCCTAGAAGGTAGAGACTTCTGGAGGCTAATACATGATAAACACGGGAAGATCGAAC
AGAAGCTTTTAGATAGAATTTGGCCCAGACTTCGTGTGCTTGCCAGTTCTTCCCCCATTGAAAAATATGCACTTATAAAA
GGCATAATTAACAGTGATGCTTTGGGAGTGAAGCAGGTTGTAGCTGTAACAGGTGATGGTACTAATGATGGCCCAGTGTT
AAAAGTAGCAGATGTTGGGTTTGCCATGGACATCATTGGAACAGATATCGCTAGAGAAGCGTCAGACATCATTTTAATGG
ATGACAACTTCACAAGCATTATGAAAGCGATTATGTGGGGGAGGAACCTTTATGACAACATCTCCAGGTTCCTCCAATTT
CAGCTGACTGTCAGCGTAGTGTCAACGGTTGTGGTATTTATAGGAGCATGTGTGACACAGGATTCGCCACTTAATGCAGT
ACAGATGCTGTGGATCAACCTCATAATGGATGCATTTGCTTCCCTTGCCTTAGCCACTGAAAAACCAACTGAGGCACTTT
TGCTAAGACCTTATGGAAGGAAGGAGTACCTCCTATCCAGTTCCATGGTAAAGTACATTTTGGGCCATGCAGCCTACCAG
CTTACAGTCACTTTTGTTCTTATGTTTGTTGGTGAAGAGCTCTTTGGTTTTGAGAGTGGAAGAAAAGCTCTTCTCCATGC
TCCTCCTTCCACCCACTATACGATGGTATTCAACACTTTCGTTATGATGCAGCTTTTCAATGAAATTAATGCTCGAAAGA
TTCATGGTGAGAGAAATGTCTTTGAAGGGATCCTTGGCAATAATATCTTTTGCATCATTGTGGGGGGAACATTTGCCTTA
CAGTTCTTTATTGTACAATTTGGTGGAAATGTTTTCAGTTGCACCAACCTTAGTCCAGACTTATGGCTGTGGTGCATTTT
CCTAGGAGCAGGGGTATTAGTGTGGGGTCAGTTGGTAACCACCATTCCCAACAAGTGTGTGGAACCCCTTATAAGGTTTA
TGGGTGGCAGAGCAGAAGAAAAGGCTGATACTGTCTGCCCTATAGCATCAATGACTGAGGAACTATTATGGGTTCAGAAC
CTAAGCAGAATCCAGAATCAGAAAAGACTAATGAAGTCATATCATTCTTGCTTTCAC
ORF - retro_shar_73 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 63.96 % |
| Parental protein coverage: | 58.89 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | KKANMHKKEKSVLQGKLTKLAVQIGKAGLVMSAITVIILVLYFTVDTFVVNKKPWLPECTPVYVQYFVKF |
| K......K.KSVLQ.KLTKLA...GK.G..M...TVI.LV.YF...TFV.....W...CT.VY.QYF.KF | |
| Retrocopy | KPKHYSSKAKSVLQKKLTKLAILLGKCGMLMATVTVITLVTYFVINTFVIERQKWTYGCTSVYIQYFIKF |
| Parental | FIIGVTVLVVAVPEGLPLAVTISLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTVVQ |
| FIIG.T.LVV.VPE.LPLAVT.SLAY.VKKMMKD.NLVRHLDACET.GN.T.IC.DKTGTLT.NRMTVVQ | |
| Retrocopy | FIIGITILVVTVPESLPLAVTLSLAYAVKKMMKDKNLVRHLDACETIGNVTTICLDKTGTLTMNRMTVVQ |
| Parental | AYIGDVHYKEIPDPSVINSQTMELLVNAIAINSAYTTKILPPEKEGALPRQVGNKTECGLLGFVLDLKQD |
| AYIG..HY.E.P....I.......L...IA.N..Y..K...P.....L..Q.GNKTEC.LLGF.L.L..D | |
| Retrocopy | AYIGENHYQELPKSNSIPEPILGYLLKGIAVNCSYSSKVIFPKDGKKLVQQIGNKTECALLGFLLHLELD |
| Parental | YEPVRSQMPEEKLYKVYTFNSVRKSMSTVIKMPDESFRMYSKGASEIVLKKCCKILSASGEARVFRPRDR |
| YE..R...P...LYKVYTFNS.RK.MSTV.K.P...F.M.SKG.SE.VL.KCCKIL...G.......... | |
| Retrocopy | YEAERNKIPQQNLYKVYTFNSDRKCMSTVLKLPNGGFQMFSKGPSETVLDKCCKILNKMGKPVELTETKK |
| Parental | DEMVKKVIEPMACDGLRTICVAYRDFPSSP-EPDWENENDILNDLTCICVVGIEDPVRPEVPEAIRKCQR |
| .E.V..VIEPM...GL..IC.A.R.F.....EPDWE.E..I...LTCI.VVGIEDPVRPE.P.AIRKCQ. | |
| Retrocopy | REIVQNVIEPMSSEGLQIICLAFREFSDKEKEPDWETEENIITKLTCIAVVGIEDPVRPEIPSAIRKCQQ |
| Parental | AGITVRMVTGDNINTARAIAIKCGIIHPGEDFLCIEGKEFNRRIRNEKGEIEQERIDKIWPKLRVLARSS |
| AGITVRM.TGDN.NTARA.A.KCGI.......L..EG..F.R.I....G.IEQ...D.IWP.LRVLA.SS | |
| Retrocopy | AGITVRMITGDNLNTARAVALKCGILNLRDNYLSLEGRDFWRLIHDKHGKIEQKLLDRIWPRLRVLASSS |
| Parental | PTDKHTLVKGIIDSTHTEQRQVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIV |
| P..K..L.KGII.S......QVVAVTGDGTNDGP.LK.ADVGFAM.I.GTD.A.EASDIIL.DDNF.SI. | |
| Retrocopy | PIEKYALIKGIINSDALGVKQVVAVTGDGTNDGPVLKVADVGFAMDIIGTDIAREASDIILMDDNFTSIM |
| Parental | KAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTFASLALATEPPTE |
| KA.MWGRN.YD.IS.FLQFQLTV.VV...V.F.GAC.TQDSPL.AVQMLW.NLIMD.FASLALATE.PTE | |
| Retrocopy | KAIMWGRNLYDNISRFLQFQLTVSVVSTVVVFIGACVTQDSPLNAVQMLWINLIMDAFASLALATEKPTE |
| Parental | SLLLRKPYGRNKPLISRTMMKNILGHAVYQLTLIFTLLFVGEKMFMIDSGRNAPLHSPPSEHYTIIFNTF |
| .LLLR.PYGR...L.S..M.K.ILGHA.YQLT..F.L.FVGE..F...SGR.A.LH.PPS.HYT..FNTF | |
| Retrocopy | ALLLR-PYGRKEYLLSSSMVKYILGHAAYQLTVTFVLMFVGEELFGFESGRKALLHAPPSTHYTMVFNTF |
| Parental | VMMQLFNEINARKIHGERNVFDGIFRNPIFCTIVLGTFAIQIVIVQFGGKPFSCSPLQLDQWMWCIFIGL |
| VMMQLFNEINARKIHGERNVF.GI..N.IFC.IV.GTFA.Q..IVQFGG..FSC..L..D.W.WCIF.G. | |
| Retrocopy | VMMQLFNEINARKIHGERNVFEGILGNNIFCIIVGGTFALQFFIVQFGGNVFSCTNLSPDLWLWCIFLGA |
| Parental | GELVWGQIIATIP |
| G.LVWGQ...TIP | |
| Retrocopy | GVLVWGQLVTTIP |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Sarcophilus harrisii was not studied using RNA-Seq expression data.
Sarcophilus harrisii was not studied using ChIP-Seq data.
Sarcophilus harrisii was not studied using EST data.
Sarcophilus harrisii was not studied using FANTOM5 data.
retro_shar_73 was not experimentally validated.
Retrocopy orthology:
Sarcophilus harrisii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Sarcophilus harrisii | ENSSHAG00000017272 | 1 retrocopy |
retro_shar_73 ,
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