RetrogeneDB ID: | retro_sara_454 | ||
Retrocopy location | Organism: | Shrew (Sorex araneus) | |
| Coordinates: | scaffold_214059:10389..11196(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | TEFM | ||
| Ensembl ID: | ENSSARG00000007464 | ||
| Aliases: | None | ||
| Description: | transcription elongation factor, mitochondrial [Source:HGNC Symbol;Acc:26223] |
Retrocopy-Parental alignment summary:
>retro_sara_454
AAGTGGAGATGTTTCCCTGTTTCCCTAGAGTCATCCTTGTCCAGGCTCCTCCTAATTCCTGCTGCCGAAGAAAATCCACT
TCTCCAGAAATTACACCAAATGCTGATACTTGCGACAAAAAGACAGAAGCATCTGGAAAAGCACTTGACCAGCAATTCTC
TTCAGACAGCAAACTTCCATCTTGCATGTTCTGAATAAAGCATCTAATAAAGATCTTGAAGCTTTCAGACTGCTTCATGG
AAGAAAGTCTACCGAATCTTGTAGCACACAGATAAAAGTTTGGGCCACTTCAGAATTTGGAGAGTTTCATGAATGTGCCC
TTGTTCCAGTCTAAAACTACCGTTCAAGGGTATAACTCCATTCTTTGTCCAGGGACAGAGGGAAGAAAAAACAATCACAG
GAAAACCAACTCTTGAAAAAGCTCATCAACCCTAATAGAGAACTAGAAAGACTTAAAGAAATCAATAGTATCATATCCAT
TGTTTTTGGTACTCAAAAAATAGCCTGGGTTCACCTTGACTGTAAATTATCTGTTTTGGACCGGCAGCAAAATGAATGTT
GCCAATTGGTTAAAGGAACATACCTAACATCGAACTACTTTGAAAAAAATTTCTTCCATCATGCCACAGATGCCTACAGC
GGACTTTTATATTCTGGAAAAAAATCGGAATTTCCATTCAGAACTCAACTCTGTTCCCTGTCCTATTACACTTTCGTTTC
ATGGAAGCTATGCTATATGCCTTGTTGAACAAGACTTCCGCGCAGGACGGCCAGCCCCAGGTGCTGAGCACGAACCAGAA
TGCAGTG
ORF - retro_sara_454 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 80.73 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 6 |
Retrocopy - Parental Gene Alignment:
| Parental | KWRCFPVPLESSL-FQALPNCCCRRKSTSPEVTPNADACDEKTKASEKALDQLFSSE-QQTSILHVLNTA |
| KWRCFPV.LESSL..QA.PN.CCRRKSTSPE.TPNAD.CD.KT.AS.KALDQ.FSS..QQTSILHVLN.A | |
| Retrocopy | KWRCFPVSLESSL<VQAPPNSCCRRKSTSPEITPNADTCDKKTEASGKALDQQFSSD<QQTSILHVLNKA |
| Parental | SNKELEAFRLLRGRKST-NIVAHREKFGPFQNLESIMNVPLFQYKTTVQVCNSILCPGT-RGKKKQSQEN |
| SNK.LEAFRLL.GRKST.N.VAHR.KFGP.QNLES.MNVPLFQ.KTTVQ..NSILCPGT.RGKKKQSQEN | |
| Retrocopy | SNKDLEAFRLLHGRKST>NLVAHR*KFGPLQNLESFMNVPLFQSKTTVQGYNSILCPGT<RGKKKQSQEN |
| Parental | RLLKKLIKPDIELERLKAINSIVSIVYGTRKIAWAHLDRKLSVLDWQQNECCRLVKGTYPTSNYFE-KIS |
| .LLKKLI.P..ELERLK.INSI.SIV.GT.KIAW.HLD.KLSVLD.QQNECC.LVKGTY.TSNYFE.KIS | |
| Retrocopy | QLLKKLINPNRELERLKEINSIISIVFGTQKIAWVHLDCKLSVLDRQQNECCQLVKGTYLTSNYFE>KIS |
| Parental | SIITKMPRADFYILE-KIGISIQNSTLFPILLHFHIIEAMLYALLNQTFAQDGQQQVLSMNRNAV |
| SI...MP.ADFYILE.KIGISIQNSTLFP.LLHF...EAMLYALLN.T.AQDGQ.QVLS.N.NAV | |
| Retrocopy | SIMPQMPTADFYILE>KIGISIQNSTLFPVLLHFRFMEAMLYALLNKTSAQDGQPQVLSTNQNAV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Sorex araneus was not studied using RNA-Seq expression data.
Sorex araneus was not studied using ChIP-Seq data.
Sorex araneus was not studied using EST data.
Sorex araneus was not studied using FANTOM5 data.
retro_sara_454 was not experimentally validated.
Retrocopy orthology:
Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Sorex araneus | ENSSARG00000007464 | 1 retrocopy |
retro_sara_454 ,
|