RetrogeneDB ID: | retro_rnor_2759 | ||
Retrocopy location | Organism: | Rat (Rattus norvegicus) | |
| Coordinates: | AABR06111564.1:661..1030(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSRNOG00000049133 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | Guca1b | ||
| Ensembl ID: | ENSRNOG00000015623 | ||
| Aliases: | None | ||
| Description: | guanylyl cyclase-activating protein 2 [Source:RefSeq peptide;Acc:NP_001101668] |
Retrocopy-Parental alignment summary:
>retro_rnor_2759
GTATGTGGCATGAACCTCGTGCTGAGGGGCAGCCTGGAACACAAGCTCAAGTGGACCTTCAAGATCTATGACAAGGACCG
AAATGGCTGCATCGACCGCCTGGAACTCCTGGACATTGTGGAGGCGATTTACAAGCTGAAGAAAGCCTGCCGAGCGGAGC
TGGATCTGGAACACCAGGGCCAGCTGCTCACGCCCGAGGAGGTGGTGGACAGGATCTTCCTCCTGGTGGACGAGAATGGA
GACGGCCAGCTGTCTCTGACCGAGTTCATCGAGGGCGCCCGTCGCGATAAGTGGGTAATGAAGATGCTACAAATGGATAT
CAACCCAGGCTGCTGGATCACGCAGCAGAGGCGGAGAAGCGCCATGTTC
ORF - retro_rnor_2759 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 94.31 % |
| Parental protein coverage: | 61.19 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | VAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRLELLDIVEAIYKLKKACRAELDLEQQGQLLTPEEVVD |
| V...NLVLRG.LEHKLKWTFKIYDKDRNGCIDRLELLDIVEAIYKLKKACRAELDLE.QGQLLTPEEVVD | |
| Retrocopy | VCGMNLVLRGSLEHKLKWTFKIYDKDRNGCIDRLELLDIVEAIYKLKKACRAELDLEHQGQLLTPEEVVD |
| Parental | RIFLLVDENGDGQLSLTEFIEGARRDKWVMKMLQMDVNPGGWITQQRRRSAMF |
| RIFLLVDENGDGQLSLTEFIEGARRDKWVMKMLQMD.NPG.WITQQRRRSAMF | |
| Retrocopy | RIFLLVDENGDGQLSLTEFIEGARRDKWVMKMLQMDINPGCWITQQRRRSAMF |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP017611_brain | 0 .00 RPM | 0 .07 RPM |
| SRP017611_kidney | 0 .00 RPM | 0 .21 RPM |
| SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_2759 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_2759 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_2759 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Rattus norvegicus | ENSRNOG00000015623 | 1 retrocopy |
retro_rnor_2759 ,
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