RetrogeneDB ID: | retro_rnor_1716 | ||
Retrocopy location | Organism: | Rat (Rattus norvegicus) | |
| Coordinates: | 20:6201136..6201772(+) | ||
| Located in intron of: | ENSRNOG00000030431 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | Arrb2 | ||
| Ensembl ID: | ENSRNOG00000019308 | ||
| Aliases: | Arrb2, BARRES | ||
| Description: | Beta-arrestin-2 [Source:UniProtKB/Swiss-Prot;Acc:P29067] |
Retrocopy-Parental alignment summary:
>retro_rnor_1716
CTGCACCTAGAGGCTTCCCTGGACAAAGAGCTGTACTACCATGGGGAACCCCTCAATGTCAACGTCCACGTCACCAACAA
TTCTGCCAAGACCGTCAAGAAGATCAGAGTGTCTGTGAGACAGTATGCCGACATTTGCCTCTTCAGCACTGCGCAGTACA
AGTGTCCTGTGGCTCAGCTTGAACAAGATGACCAGGTGTCTCCCAGTTCCACATTCTGCAAGGTGTACACCATAACCCCG
CTGCTCAGTGACAACCGAGAGAAGCGTGGCCTTGCCCTTGATGGGCAGCTCAAGCACGAAGACACCAACCTGGCTTCCAG
CACCATTGTGAAGGAGGGAGCCAACAAGGAGGTGCTGGGAATCCTAGTATCCTACAGGGTCAAGGTGAAGCTGGTGGTGT
CTCGAGGCGGGGATGTCTCCGTGGAGCTACCTTTCGTCCTAATGCACCCCAAGCCCCACGACCACATCACCCTTCCCCGA
CCCCAGTCAGCCCCCCGGGAAATAGACATCCCTGTGGATACCAACCTCATTGAATTCGATACCAACTATGCCACAGACGA
CGACATCGTGTTTGAGGACTTTGCGCGGCTTCGGCTGAAGGGGATGAAGGATGACGACTGTGATGACCAGTTCTGC
ORF - retro_rnor_1716 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 100.0 % |
| Parental protein coverage: | 51.71 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LHLEASLDKELYYHGEPLNVNVHVTNNSAKTVKKIRVSVRQYADICLFSTAQYKCPVAQLEQDDQVSPSS |
| LHLEASLDKELYYHGEPLNVNVHVTNNSAKTVKKIRVSVRQYADICLFSTAQYKCPVAQLEQDDQVSPSS | |
| Retrocopy | LHLEASLDKELYYHGEPLNVNVHVTNNSAKTVKKIRVSVRQYADICLFSTAQYKCPVAQLEQDDQVSPSS |
| Parental | TFCKVYTITPLLSDNREKRGLALDGQLKHEDTNLASSTIVKEGANKEVLGILVSYRVKVKLVVSRGGDVS |
| TFCKVYTITPLLSDNREKRGLALDGQLKHEDTNLASSTIVKEGANKEVLGILVSYRVKVKLVVSRGGDVS | |
| Retrocopy | TFCKVYTITPLLSDNREKRGLALDGQLKHEDTNLASSTIVKEGANKEVLGILVSYRVKVKLVVSRGGDVS |
| Parental | VELPFVLMHPKPHDHITLPRPQSAPREIDIPVDTNLIEFDTNYATDDDIVFEDFARLRLKGMKDDDCDDQ |
| VELPFVLMHPKPHDHITLPRPQSAPREIDIPVDTNLIEFDTNYATDDDIVFEDFARLRLKGMKDDDCDDQ | |
| Retrocopy | VELPFVLMHPKPHDHITLPRPQSAPREIDIPVDTNLIEFDTNYATDDDIVFEDFARLRLKGMKDDDCDDQ |
| Parental | FC |
| FC | |
| Retrocopy | FC |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP017611_brain | 0 .07 RPM | 28 .61 RPM |
| SRP017611_kidney | 0 .00 RPM | 9 .00 RPM |
| SRP017611_liver | 0 .07 RPM | 7 .87 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_1716 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_1716 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_1716 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Rattus norvegicus | ENSRNOG00000019308 | 1 retrocopy |
retro_rnor_1716 ,
|