RetrogeneDB ID: | retro_pvam_1233 | ||
Retrocopy location | Organism: | Megabat (Pteropus vampyrus) | |
| Coordinates: | scaffold_4629:31708..32117(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | CD81 | ||
| Ensembl ID: | ENSPVAG00000014218 | ||
| Aliases: | None | ||
| Description: | CD81 molecule [Source:HGNC Symbol;Acc:1701] |
Retrocopy-Parental alignment summary:
>retro_pvam_1233
GGGTGCTCTGATGATGTTCATCCAGCTCCTGGGCTGCTGGGGATGTTCTTCACCTGCCTGGTGATCCTCTGCCGACAAAG
TGGCCGCCGGCATCAAGGGCTTTGTCCACAAGAACCAGATCGCCAAGGATGTGGAGCAATTCTACGACCAGGCCTTGCAG
CAGGTTGTGGTGGACAACGGGGCCACCAACGCCAGGGCCATGGTGAAGACCTCTCACGAGACACGCAACTGCTATGACTC
CCACACGCTGACCTCACTGACCACCTCTGTGCTCAAGAACAGCCTGTGTCCCTCAGACAGCACCATCACCAGCAAGTTGC
TACAGGAAGACTGCCACCAGAAGAATGACGACCTCCTGTCGGGGAAGCTGTACCTCATCGGCATCACGGCCATCATAGTC
GCCATGGTC
ORF - retro_pvam_1233 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 63.04 % |
| Parental protein coverage: | 64.02 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | GCYGAIQESQCLLGTFFTCLVILF-ACEVAAGIWGFVNKDQIAKDVKQFYDQALQQALVDDEANNAKAVV |
| GC.........LLG..F........A..VAAGI.GFV.K.QIAKDV.QFYDQALQQ..VD..A.NA.A.V | |
| Retrocopy | GCSDDVHPAPGLLG-MFFTCLVIL>ADKVAAGIKGFVHKNQIAKDVEQFYDQALQQVVVDNGATNARAMV |
| Parental | KTFHETLNCCGSNTLTSLTTSVLMNNLCPSGSTVIGNLLKEDCHQKIDDLFSGKLYLIGIAAIVVAVI |
| KT.HET.NC..S.TLTSLTTSVL.N.LCPS.ST....LL.EDCHQK.DDL.SGKLYLIGI.AI.VA.. | |
| Retrocopy | KTSHETRNCYDSHTLTSLTTSVLKNSLCPSDSTITSKLLQEDCHQKNDDLLSGKLYLIGITAIIVAMV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_1233 was not experimentally validated.
Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Pteropus vampyrus | ENSPVAG00000014218 | 1 retrocopy |
retro_pvam_1233 ,
|