RetrogeneDB ID: | retro_onil_35 | ||
Retrocopy location | Organism: | Tilapia (Oreochromis niloticus) | |
| Coordinates: | GL831143.1:7813881..7814946(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSONIG00000020922 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | PAQR8 (2 of 2) | ||
| Ensembl ID: | ENSONIG00000003353 | ||
| Aliases: | None | ||
| Description: | progestin and adipoQ receptor family member VIII [Source:HGNC Symbol;Acc:15708] |
Retrocopy-Parental alignment summary:
>retro_onil_35
ATGTCGACTGAGGTTTTGCAGCGGCTCAGCACCATAACACTGAGCACCAAGCACCTGCGTCGTCTCCCTCACCTCTCAGA
CTTCCTCCCTTTCTCTTTACCATCACCCAGCCCCACCGTCACTGCCTCCCACGTACCCAGCCTGTTCCGGGAACCCTACA
TCCTGTCAGGATACCGTCCTGTCCAGCAAGACTGGCGCTGCTATCTTCTCAGCCTCTTCCAGAAACATAATGAGTCCCTG
AACGTGTGGACCCACTTGCTGGCCGGTCCTGTCCTGCTGCTCCGCTGGTGGGCCAATGTAGACACCCTGGGGTACACCTT
GGATACGGCCTCGCTACCTCTGCTCCTGTTCTTGGTGTCATCTCTCACATATCTGTACCTCAGTGTGGCGGCTCATCTCC
TGCAATCTCACTCTGAACGCGCACACTACTTCTTCTTCTTCTTGGACTACGTGGGTGTGGCCGTGTATCAGTACGGGTGT
TCGCTCGGCCACTATTTCTACGCGTCTGAGCCAGCGTGGCGAGAACGCGTCGGGGTGATGTTTCTGCCTGGCGCCGCCTT
CTTTGGGTGGCTCTCCTGCACCGGTTGCTGTTATGCCAAGTTTAGGTACAGGCGGCCATATCCGCCTCAGCGTAAAGTCT
GCCAGCTGATCCCCACCGGCTTAGCGTACGTGCTGGATATCAGCCCCATAGCCCACCGCCTGCTCACTGTCTCCTGGTCA
CAGGAGCCCTCGCTGCCCTTCCACGCTCTCCAGATCGCCTGCTTCCTCTTGTCTGCAGTCTTCTTCTCTTGCCCCATCCC
GGAGCGCTTCTTTCCAGGCCACTGTGACTTTGCAGGCCAGGGTCACCAAATCTTCCACATGCTTCTGTCCCTGTGCACCT
TGTCCCAGCTGGAGGCTTTGTTCCAGGACTACGCCCAGCGGAGGGATACAGTGGTGGAGTTATTTGGGGAGTGGCAGTTG
TGGTGGGCGTGCGTATCCTTCCCCGTCCTGTTAGTGTGCTGCATCCTGACGGCGCTGATCGCAGTGAAGCACATGAGCAA
GGCACTGCAGAGTAAAGACGAGTGA
ORF - retro_onil_35 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 60.71 % |
| Parental protein coverage: | 69.72 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | GFSVDASSLPLVLYVLSAVTYLSCSAAAHLLQSHSEQAHYSLFFLDYVGVAVYQYGCALALCLYSSNTAW |
| G...D..SLPL.L...S..TYL..S.AAHLLQSHSE.AHY..FFLDYVGVAVYQYGC.L....Y.S..AW | |
| Retrocopy | GYTLDTASLPLLLFLVSSLTYLYLSVAAHLLQSHSERAHYFFFFLDYVGVAVYQYGCSLGHYFYASEPAW |
| Parental | RQSMLGQVFLPAAALLAWLSCTACCYAKLRFRRPYPLHRKLCQLIPMGVAYLLDISPVAHRLATHSWMGS |
| R....G..FLP.AA...WLSCT.CCYAK.R.RRPYP..RK.CQLIP.G.AY.LDISP.AHRL.T.SW... | |
| Retrocopy | RERV-GVMFLPGAAFFGWLSCTGCCYAKFRYRRPYPPQRKVCQLIPTGLAYVLDISPIAHRLLTVSWSQE |
| Parental | PALPLHFLQVVLFMLSAFFFSCPVPECFSPGHFDIVGHGHQLFHILLSLCTLAQQEALFHDFLWRRPAMV |
| P.LP.H.LQ...F.LSA.FFSCP.PE.F.PGH.D..G.GHQ.FH.LLSLCTL.Q.EALF.D...RR...V | |
| Retrocopy | PSLPFHALQIACFLLSAVFFSCPIPERFFPGHCDFAGQGHQIFHMLLSLCTLSQLEALFQDYAQRRDTVV |
| Parental | REFGEERLLLACASFPCLMLCCTLTAL-AMRRQAQAQLMKEQ |
| ..FGE..L..AC.SFP.L..CC.LTAL.A......A...K.. | |
| Retrocopy | ELFGEWQLWWACVSFPVLLVCCILTALIAVKHMSKALQSKDE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Oreochromis niloticus was not studied using RNA-Seq expression data.
Oreochromis niloticus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_onil_35 retrocopy.
Oreochromis niloticus was not studied using FANTOM5 data.
retro_onil_35 was not experimentally validated.
Retrocopy orthology:
Oreochromis niloticus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Oreochromis niloticus | ENSONIG00000003353 | 1 retrocopy |
retro_onil_35 ,
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