RetrogeneDB ID: retro_oluc_2

Retrocopy location

• Organism: Ostreococcus lucimarinus
• Coordinates: 3:397906..398392(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: OSTLU_34527
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: OSTLU_29913
• Aliases: None
• Description: None

Sequence

>retro_oluc_2
ATGGAACTTAAGGTTGGTAAGGTGTTGAGCGTAGAAAATCATCCCGAGAGTGAGAAACTATACGTTGAGATGGTCGAGTG
CGGAGAGGACGAACCGCGTCTCATTTGCTCTGGTTTAGCGCCATACATGAGCAAAGACGACGTTTTAGGCAAACTCGTCA
TCGTCGTGGCGAACTTAAAGCCACGTAATATGGCTGGGATGAAGTCGAACGGTATGCTCTTAGCCGCATCCGATGCAGCG
CACGAAAATGTTGAGTTGCTCTGCGCTCCGGAAGGCGCCGTGCCAGGCGAACGCATCACATGGGATGGCGCGGAGAATAT
CGAGCCGCACGGCGTCAATAAAGTTGCGAAAAAGAAGATATGGGAGGGTGTTCAAAAAGATTTGAAGACGGATGCGACGA
AAGGAGCGAATTGGAACGGGCTACCGATGCTGACGAGCGCGGGTCAGTGCACGTGCGCTTCACTCACTGACGCTAACGTC
GGCTAA

Alignment

ORF - retro_oluc_2 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 52.44 %
• Parental protein coverage: 75.58 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VDLRVGRVLSAKRHEDAEKLYIEEIDLGEPEGPRTILSGLVPYMSAEDIEGKSVIVFANLKARKLAGIPS
          ..L.VG.VLS...H...EKLY.E....GE.E.PR.I.SGL.PYMS..D..GK.VIV.ANLK.R..AG..S
Retrocopy MELKVGKVLSVENHPESEKLYVEMVECGEDE-PRLICSGLAPYMSKDDVLGKLVIVVANLKPRNMAGMKS

Parental  HGMILAASDASHENVELLVAPEGAVVGERVRFGESDEPQAEPQTPNQIQKKKTWEELQPLLVTNQDCVAT
          .GM.LAASDA.HENVELL.APEGAV.GER...........EP...N...KKK.WE..Q..L.T.....A.
Retrocopy NGMLLAASDAAHENVELLCAPEGAVPGERITWDGAE--NIEPHGVNKVAKKKIWEGVQKDLKTDATKGAN

Parental  YEGAPMMTSAGPVKCATMKGATIG
          ..G.PM.TSAG...CA....A..G
Retrocopy WNGLPMLTSAGQCTCASLTDANVG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Ostreococcus lucimarinus was not studied using RNA-Seq expression data.

ChIP-Seq

Ostreococcus lucimarinus was not studied using ChIP-Seq data.

EST

Ostreococcus lucimarinus was not studied using EST data.

TSS

Ostreococcus lucimarinus was not studied using FANTOM5 data.

Lab

retro_oluc_2 was not experimentally validated.

Homology

Retrocopy orthology:

Ostreococcus lucimarinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Ostreococcus lucimarinus	OSTLU_29913	1 retrocopy	retro_oluc_2 ,