RetrogeneDB ID: | retro_olat_9 | ||
Retrocopy location | Organism: | Medaka (Oryzias latipes) | |
| Coordinates: | 19:4483597..4484740(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSORLG00000004803 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | adrb2b | ||
| Ensembl ID: | ENSORLG00000002214 | ||
| Aliases: | None | ||
| Description: | adrenergic receptor, beta 2b [Source:ZFIN;Acc:ZDB-GENE-070410-32] |
Retrocopy-Parental alignment summary:
>retro_olat_9
ATGGGGGACGGCGGCGCGTCCTCTCCAGTGACCCCCCACAACGGCACTGGAACCGAGGCGTCCAACGGGCAGGGCACCGT
TCCAGCCGCGTCCGAGCAGTGGACAGCAGGCATGAGTCTGGTGATGGCTTTGATTGTGCTGTCCATTGTTTTTGGGAATA
TCCTGGTGATCTTGGCCATAGCCAGGACGCAGAGGCTGCAGACCCTCACCAATGTGTTCATCGTATCGCTGGCCAGTGCA
GATCTCATCATGGGCTTACTTGTTGTGCCGTTTGGCGCTGTGCTCGAGGTGCGCGGCTTGTGGCTTTACGGCTCTTTTTT
CTGTGAGATCTGGACCTCTGTGGATGTCCTCTGCGTCACCGCCAGCATAGAGACCCTGTGCGTAATCGCCATAGACAGGT
ACGTGGCCATCACTTCACCTTTCCGCTACCAAAGCTTGTTAACCAAAAGTCGGGCCAAAGCGGTGGTGTGTGTGGTGTGG
GCCATCTCTGCGCTGGTCTCCTTCCTCCCCATCCTGATGCACTGGTCCCGCGACAGCATGGACACGGACTGCTACGAAAA
CCCCCAATGCTGCGACTTTGTCACCAACAGGGCATATGCCATCTCCTCCTCCGTTATCTCCTTCTACATTCCTCTCGTGG
TGATGATTTTTGTTTACGCACGCGTGTACAGAGAAGCGAAAAAGCAGCTCAAAAAGATCGACAAGTGTGAGGGCAGGTTT
CACAACACCCTGACAGGGCTGACCTCCAAGTGCAAGAAGAGACCTTCAAAGATCTTGGCGCTCAGGGAGCAAAAGGCGCT
GAAAACTCTGGGAATCATCATGGGGACGTTCACTCTGTGCTGGCTGCCCTTCTTCATAGTCAACGTTGTGCGCGTATTTT
GCGCAGAGCTTGTGGACAAGAACGTCTTCGTGTTCCTGAACTGGCTGGGTTACGTGAACTCTGCCTTTAACCCAATTATT
TACTGCCGGAGTCCGGACTTCAGGAAGGCTTTTAAGAGGCTGCTGTGCTGCCCGAGGCAAGCCGATCGCAGGCTGCACAT
CAGCTCCTGCGACCTGACGCGCTGCTCCGGCGGGTTCGTGTCAGCGCTGGAGCCTGGCACGCTGGAGATGTGGTCCGACT
GCGCCGTGTTGGACAGCAGCGAC
ORF - retro_olat_9 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 51.79 % |
| Parental protein coverage: | 97.46 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LAVAMAILVLAIVFGNVMVISAILRFHRLQTVTNLFIASLAVADLIMGVVVVPFSSSNILLRSWKFGNFM |
| ....MA..VL.IVFGN..VI.AI.R..RLQT.TN.FI.SLA.ADLIMG..VVPF.........W..G.F. | |
| Retrocopy | MSLVMALIVLSIVFGNILVILAIARTQRLQTLTNVFIVSLASADLIMGLLVVPFGAVLEVRGLWLYGSFF |
| Parental | CEFWTAADVLCVTASIETLCVIALDRYLAITLPLRYPTLLTRARAFAAILAVWAVASLISFLPIYLKLWL |
| CE.WT..DVLCVTASIETLCVIA.DRY.AIT.P.RY..LLT..RA.A....VWA...L.SFLPI....W. | |
| Retrocopy | CEIWTSVDVLCVTASIETLCVIAIDRYVAITSPFRYQSLLTKSRAKAVVCVVWAISALVSFLPILMH-WS |
| Parental | SDEQKAQDCMKKEDCCEFHTNKGYAVISSIVSFYLPLVVMIFLYSRVFQEAQKQLKKIRDGESDKGEKNE |
| .D.....DC.....CC.F.TN..YA.ISS.V.......V.......V........KK......DK.E... | |
| Retrocopy | RDSMDT-DCYENPQCCDFVTNRAYA-ISSSVISFYIPLVVMIF---VYARVYREAKK-QLKKIDKCEGRF |
| Parental | ENRANTQKEEGKHTAAKRLKFSLKEHKALKTLGIIMGTFTLCWLPFFILNIVMAYYKGDSINVPFRLLNW |
| .N.........K....K.L...L.E.KALKTLGIIMGTFTLCWLPFFI.N.V............F..LNW | |
| Retrocopy | HNTLTGLTSKCKKRPSKIL--ALREQKALKTLGIIMGTFTLCWLPFFIVNVVRVFCAELVDKNVFVFLNW |
| Parental | LGYSNSAFNPLIYCRSPDFRHAFQEIL |
| LGY.NSAFNP.IYCRSPDFR.AF...L | |
| Retrocopy | LGYVNSAFNPIIYCRSPDFRKAFKRLL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Oryzias latipes was not studied using RNA-Seq expression data.
Oryzias latipes was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_olat_9 retrocopy.
Oryzias latipes was not studied using FANTOM5 data.
retro_olat_9 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_olat_9 has 0 orthologous retrocopies within teleost group .Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Oryzias latipes | ENSORLG00000002214 | 1 retrocopy |
retro_olat_9 ,
|
| Oryzias latipes | ENSORLG00000020283 | 1 retrocopy |