RetrogeneDB ID: | retro_olat_41 | ||
Retrocopy location | Organism: | Medaka (Oryzias latipes) | |
| Coordinates: | 7:26826700..26827147(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSORLG00000016726 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_olat_41
CTCTTTTCAGCAGCTCTGCAGGACAGAGACTCTCTTGTTGATGCAGAAACCAACATCTATGCAAAACGTGAAGGAGAAGA
CATCACTGTTAGATGTTATCTTGGATATTTAGGGAGCAGAAAGCTGCTCTGTAAGGAAACATGTGAAGAAGGAAACATTC
TCATAGACACATATGGAGATGAAGATCAGAGAGGAAGATACAGCATTAAATATGAGTATCGATATATTGGATCAAGTATT
TTAGATGTGACGATCACTAAACTCACAAAGTCAGACTCAGGTTTGTACAGATGTGAATTACAAGAAGACTGGCATCCAGA
TTCAGAAGACAACTTCAAAATAATCGTTACAGAAGGTGAGTTTGATCCTCAAAATCATCAAAATATTTCTCTGTGAAAAT
TTGTGCCTTTTGTTTCATGTTTATTACAGTTTTTTTACCTCTGCTTA
ORF - retro_olat_41 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 77.18 % |
| Parental protein coverage: | 64.78 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LFLTALQDRDSLVDAETNIYAKREGEDITVRCYLGYLGSRKLLCKETCEEGNILIDTYGDEAQRGRYSIK |
| LF..ALQDRDSLVDAETNIYAKREGEDITVRCYLGYLGSRKLLCKETCEEGNILIDTYGDE.QRGRYSIK | |
| Retrocopy | LFSAALQDRDSLVDAETNIYAKREGEDITVRCYLGYLGSRKLLCKETCEEGNILIDTYGDEDQRGRYSIK |
| Parental | YEYRYIRSSILDVTITKLIKSDSGLYRCELQKDLSPDSEDNFKIIITEASVTSAPTRTVELSPTKPISFG |
| YEYRYI.SSILDVTITKL.KSDSGLYRCELQ.D..PDSEDNFKII.TE............L....P.... | |
| Retrocopy | YEYRYIGSSILDVTITKLTKSDSGLYRCELQEDWHPDSEDNFKIIVTEGEFDPQNHQNISL*KFVPFVSC |
| Parental | LLLYVSLTL |
| LL....L.L | |
| Retrocopy | LLQFFYLCL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Oryzias latipes was not studied using RNA-Seq expression data.
Oryzias latipes was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_olat_41 retrocopy.
Oryzias latipes was not studied using FANTOM5 data.
retro_olat_41 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_olat_41 has 0 orthologous retrocopies within teleost group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Oryzias latipes | ENSORLG00000016726 | 2 retrocopies |
retro_olat_41 , retro_olat_42,
|