RetrogeneDB ID: | retro_olat_27 | ||
Retrocopy location | Organism: | Medaka (Oryzias latipes) | |
| Coordinates: | 15:28900932..28901379(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | OLA.27032 | ||
| Ensembl ID: | ENSORLG00000003059 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_olat_27
ATGGCTACTTTTTTATCAGTAAATGTCAACAAGAAGCGTGAAAATCTGTTCTTCATCCTCCGGACACACAACACAAACCC
TAAAAGTTTGGAAACTTTTGAAGAGCTCCGAAGTTTTGGGAAGAACCGTGTTGCGCAGAAATGTCAGAGCCAGCAAAGGA
GAAGGAAAACATTCCTGACGAGTCTGCAGGAGGAAAACGGATTCCAAACGGAGGGAATGCTGCGAAAACCAGGGAGGACT
TTGAGTTGGCTGCCATTTACGTGTCAGATGCTCAGTACAACAGGAACATCTACTTTGACACTTCCCCTCAAGCTGTCAGG
CTCTATCTGCTCTACCATCACTGGATCCTTAAGATGCTCCTCTACTTCTTCATCGTGCTCAACTTGTCTCTGGCCATCTT
TGAGGAGCCGGCTGTCCTCCCGCTGCCCACGTGGGCCACCATGCTCG
ORF - retro_olat_27 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 99.33 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MATFLSVNVNKKRENLFFILRTHNTTPKSLETFEELRSFGKNRVAQKCQSQQRRRKTFLTSLQEENGFQT |
| MATFLSVNVNKKRENLFFILRTHNT.PKSLETFEELRSFGKNRVAQKCQSQQRRRKTFLTSLQEENGFQT | |
| Retrocopy | MATFLSVNVNKKRENLFFILRTHNTNPKSLETFEELRSFGKNRVAQKCQSQQRRRKTFLTSLQEENGFQT |
| Parental | EGMLRKPGRTLSWLPFTCQMLSTTGTSTLTLPLKLSGSICSTITGSLRCSSTSSSCSTCLWPSLRSRLSS |
| EGMLRKPGRTLSWLPFTCQMLSTTGTSTLTLPLKLSGSICSTITGSLRCSSTSSSCSTCLWPSLRSRLSS | |
| Retrocopy | EGMLRKPGRTLSWLPFTCQMLSTTGTSTLTLPLKLSGSICSTITGSLRCSSTSSSCSTCLWPSLRSRLSS |
| Parental | RCPRGPPCS |
| RCPRGPPCS | |
| Retrocopy | RCPRGPPCS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Oryzias latipes was not studied using RNA-Seq expression data.
Oryzias latipes was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_olat_27 retrocopy.
Oryzias latipes was not studied using FANTOM5 data.
retro_olat_27 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_olat_27 has 0 orthologous retrocopies within teleost group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Oryzias latipes | ENSORLG00000003059 | 1 retrocopy |
retro_olat_27 ,
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