RetrogeneDB ID: retro_ogar_932

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873530.1:26431140..26431497(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000033651
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: VOPP1
• Ensembl ID: ENSOGAG00000008223
• Aliases: None
• Description: vesicular, overexpressed in cancer, prosurvival protein 1 [Source:HGNC Symbol;Acc:34518]

Sequence

>retro_ogar_932
CCAACATATTACATATGCCGCTCCTATGAAGACTGCTGTGGCTCCTGCTGTTGTGTGCGGGCTCTGTCCATACAGAGGCT
ATGGTACTTCTGGTTCCTCCTGATGATGGGCGTGCTCTTCTGCTGCGGAGCGGGCTTCTTTATCCGGAGGCGCATGCATC
CCCCGCCGCTGATCGAGGAGCCCACCTTCAACGTGTCCTATACCCGGCAACTCCCCACACCTGCTCCAGGATCCCAGCAG
CCGGGGCCACCGTTTTACACTGACCCAGGAGGACTGGGGTTGAATCCTGTCGGGAGCACCACGGCAATGGCTTTCCAGGT
CCCGGCCGGCCCAGCCCAGCCCCAGGGAGCTCAGCCT

Alignment

ORF - retro_ogar_932 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.39 %
• Parental protein coverage: 85.61 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PSLHRCRSYEDCCGSRCCVRALSIQRLWYFWFLLMMGVLFCCGAGFFIRRRMHPPPLIEEPTFNVSYTRQ
          P....CRSYEDCCGS.CCVRALSIQRLWYFWFLLMMGVLFCCGAGFFIRRRMHPPPLIEEPTFNVSYTRQ
Retrocopy PTYYICRSYEDCCGSCCCVRALSIQRLWYFWFLLMMGVLFCCGAGFFIRRRMHPPPLIEEPTFNVSYTRQ

Parental  PPTPAPGSQQPGPPFYTDPGGLGLNPVGSTMAMAFQVQPSPAPGSSAYP
          .PTPAPGSQQPGPPFYTDPGGLGLNPVGST.AMAFQV...PA....A.P
Retrocopy LPTPAPGSQQPGPPFYTDPGGLGLNPVGSTTAMAFQVPAGPAQPQGAQP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_932 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000154978	1 retrocopy	retro_hsap_222,
Otolemur garnettii	ENSOGAG00000008223	1 retrocopy	retro_ogar_932 ,