RetrogeneDB ID: | retro_ogar_858 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873529.1:7274990..7275697(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | CA7 | ||
| Ensembl ID: | ENSOGAG00000014659 | ||
| Aliases: | None | ||
| Description: | carbonic anhydrase VII [Source:HGNC Symbol;Acc:1381] |
Retrocopy-Parental alignment summary:
>retro_ogar_858
CACCACAGCTGGGGCTACAGTCCACGTGACCACCCCTCACATTGGCACAGCTGTATCCAATGCCCAGGGAGACCGCCAAT
CGCCTATCGATATCCTATCTAGCCTGGCTTATACTCACCAGGCCTGCCACTCTGGAGCGTTCCTGTGAGGCTTACATGTC
TTTCAGCACAACCAACACTGGCCACTCTGTCCAGGTAGACTTCAGTGACAGCAATGACAAAACCATGATGACTGTGGACC
CCCTGAAAGGGCTTTACCACCTTAAGCAGTTCCACTTCCACTGGGGCAAGGAGCAGGACGATGAGGGGTCAGAGCGCACG
ATGGAAGCAATTCCTCCCCCTGCGAGCTGCACCTGGTTCCCTGGAACAGCCAGAAGCACAGCACCTCTGGGGAGGCGGCC
ACAGCAGAGGTCCTTGGCTGGGGTCCGCATCTTTTTGGAGACTGGGACGAGCACCCAGGCATGAACTGTCTGACAAATGT
CCCCTACATGGTTCAGTTTAGAGGCACCAAGACTCATTTCAGCTGCTTCAGCCTCCAGTGCCTCCTGCCTGCCAGCCGGC
GCTACTGGACCTATCCAGGTTCCCTGATGATTCCCTGCTCAGTAAGTGTATTACCTGGATTGTGCTCTAGAAGCCCATCT
ACATCTTTGAGAAGCAGATGGAGAAGTTAAGAGCCTGCTTTTCACTTTGGAGAATGAAGAGAGGATC
ORF - retro_ogar_858 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 58.54 % |
| Parental protein coverage: | 90.15 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 7 |
Retrocopy - Parental Gene Alignment:
| Parental | HHGWGYGQDDGPSHWH-KLYPI-AQGDRQSPINIVSSQA-VYSPSL-RPLEISYEACMSLSITNNGHSVQ |
| HH.WGY...D.PSHWH..LYP..AQGDRQSPI.I.SS.A..YSP.L...LE.S.EA.MS.S.TN.GHSVQ | |
| Retrocopy | HHSWGYSPRDHPSHWH<QLYPM<AQGDRQSPIDILSSLA<LYSPGL<ATLERSCEAYMSFSTTNTGHSVQ |
| Parental | VDFNDSDDRTVVTGGPLEGPYRLKQFHFHWGKKHDT-GSEHTVDGKSFPSELHLVHWNAKKYSTFGEAAS |
| VDF.DS.D.T..T..PL.G.Y.LKQFHFHWGK..D..GSE.T......P.........A......G.... | |
| Retrocopy | VDFSDSNDKTMMTVDPLKGLYHLKQFHFHWGKEQDDEGSERTMEAIPPPASCTWFPGTARSTAPLGRRPQ |
| Parental | APDGLAVVGIFLETG-DEHPSMNRLTDALYMVRFKGTKAQFSCFDPKCLLPASRHYWTYPGSLTTP-PLS |
| ....LA.V.IFLETG.DEHP.MN.LT...YMV.F.GTK..FSCF...CLLPASR.YWTYPGSL..P..LS | |
| Retrocopy | QRS-LAGVRIFLETG<DEHPGMNCLTNVPYMVQFRGTKTHFSCFSLQCLLPASRRYWTYPGSLMIP<LLS |
| Parental | ESVTWIVLREPIRVSERQMEKFR-SLLFTSEDDERI |
| ...TWIVL..PI...E.QMEK.R.SLLFT.E..ERI | |
| Retrocopy | KCITWIVL*KPIYIFEKQMEKLR<SLLFTLENEERI |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_858 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000014659 | 1 retrocopy |
retro_ogar_858 ,
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