RetrogeneDB ID: | retro_ogar_837 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873529.1:9702647..9703576(+) | ||
| Located in intron of: | ENSOGAG00000005608 | ||
Retrocopy information | Ensembl ID: | ENSOGAG00000028048 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSOGAG00000025143 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_ogar_837
CAGGTTATCAAGTGCAAGGCTGCAGTTGCCTAGAAGGCTGGAAAGCCTCTCTCCATAGAGGAGATAGAGGTGGCACCCCC
AAAGGCTCATGAAGTTTGAATTAAGATCATTGCCACTGTAGTTTGTCCACTGATGCCTACACGCTGAGTGGAGCTGATCC
ACTGGGTATTTCCTAGTGATCTTGGGACATGAAGGTGCTGGGAATCGTAGAAAGTATTGGCGACGGGGTTACTAAGCTGA
AGGCAGGTGATACAGTCATCCCACTTTGTGTCCCACAGTGTGGAGAATGCAAATTTTGTTTTAATCCTAAAACAAATTTT
TGCCAGAAGGTAAGAGTCACTCAAGGGAAAGGATTAATGCCAGATTGTACTAGCAGATTTACTTACAAAGGAAAGACAAT
GTTATATTACATGGGAACCAGCTCCTTTTCTGAATATACAGTTGTGACTGATATCTCTGTTGCTAAAACAGATCCTTTAG
CACCTTTGGATAAAGTCTGCCTTCTGGGTTGTGGCATTTCAACTGGTTATGGCACTGCTGTGAACACTGCTAAGGGGGAG
CCTGGCTCTACTTGTGCCATCTTTGGCCTGGGAGGAGTTCAACTGGCTGTGATCATGGGCTGTAAAGTGGTTGGTGCATG
TTGGATCATTAGCATGGACATCAATAAAAATAAATTTGCAAAGGCCAAAGAGTTTGGAGTCTCTGAATGTGTTAACCCCC
AGGATTTCAGTAAATCTACCCAGGAGGTGCTTGCTGGGATGAATGATGGAGGGGATGGACTATTCCTTTGAGTGTATTGG
TAACGTGAAGGTCACAAGAGCAGCACTTGAGGCGTGCCACAAAGGTGGGGCATCCATGTGGTGGTTGGAGTAGCTGTTTC
AGGTGAAGAGATATCTACCCGTCCGTTCCAGCTGGTTACAGGTTGTACA
ORF - retro_ogar_837 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 55.56 % |
| Parental protein coverage: | 82.18 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 6 |
Retrocopy - Parental Gene Alignment:
| Parental | KVIKCKAAVLWETSKPFSIEEVEVAPPKAHEVRIKMVAAGIC-RSDDHAVNGT-MYVPFP-VILGHEAA- |
| .VIKCKAAV.....KP.SIEE.EVAPPKAHEV.IK..A...C...D.....G......FP.VILGHE.A. | |
| Retrocopy | QVIKCKAAVA*KAGKPLSIEEIEVAPPKAHEV*IKIIATVVC<STDAYTLSGA>IHWVFP>VILGHEGA> |
| Parental | GIVESIGEGVTTVKPGDKVIPLFTPQCGKCRVCKHPEGNFCLKSKLSQNQGSLQDGTTRFTCRGKPVNHF |
| GIVESIG.GVT..K.GD.VIPL..PQCG.C..C..P..NFC.K....Q..G...D.T.RFT..GK..... | |
| Retrocopy | GIVESIGDGVTKLKAGDTVIPLCVPQCGECKFCFNPKTNFCQKVRVTQGKGLMPDCTSRFTYKGKTMLYY |
| Parental | LGISTFSQYTVVDEMSVAKIDAASPLEKVCLIGCGFTTGYGSAVNKIQVTRGSTCAVFGLGGVGLSVIIG |
| .G.S.FS.YTVV...SVAK.D...PL.KVCL.GCG..TGYG.AVN......GSTCA.FGLGGV.L.VI.G | |
| Retrocopy | MGTSSFSEYTVVTDISVAKTDPLAPLDKVCLLGCGISTGYGTAVNTAKGEPGSTCAIFGLGGVQLAVIMG |
| Parental | CKAAGASRIIAVDINKDKFAKAKEAGATECINPQDYKKPIQEVIAEMTDG-GVDFSFEVIGRLDTMMAAL |
| CK..GA..II..DINK.KFAKAKE.G..EC.NPQD..K..QEV.A.M.DG.G.D.SFE.IG......AAL | |
| Retrocopy | CKVVGACWIISMDINKNKFAKAKEFGVSECVNPQDFSKSTQEVLAGMNDG>GMDYSFECIGNVKVTRAAL |
| Parental | LCCH-EACGTSVVVGVPPYSQNLSMNPILLLLGRT |
| ..CH....G..VVVGV.......S..P..L..G.T | |
| Retrocopy | EACH<QRWGIHVVVGVAVSGEEISTRPFQLVTGCT |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_837 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000025143 | 1 retrocopy |
retro_ogar_837 ,
|