RetrogeneDB ID: retro_ogar_75

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873731.1:1275202..1276768(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000030789
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000003014
• Aliases: None
• Description: None

Sequence

>retro_ogar_75
CTCCCTGGTAGGAGAGATCACTGTGATAAGAGGAATTCAGTAAACAAGCTTGTTAATATTCAGCTGGGATTGAACACCCA
GTCATATCTACCAGAACTGCAGCTATTTAAGATTAAAGAGAAAATTTATGAATGTAATCCCATGGATCCACCTATCAACA
GTGATTTCTTGGTTTCCCCACTGCATAGAATTCCTTCTACTATGAAACCCCACTTTTCTCATGGACATAAGTATGATCTT
GCGGCTTCATTATTCCCACAAAAAGAGAAACCACAGATAGTGACAGAACATTACAAATGTACTGAGTGGGACAAGGCCTT
TAATCAAGCGTCACATTTGAATATTCATCAAATAATGCATGAAAAAGAGGATCAATTTAAATCTGATATATGTACCAAGG
TGTTCAATAAAAAATCAAGCCTTAAAATTCATCACAGAGTCCATGCTGTAAAGAAAACATACAAGTGTAATGAATGTGGG
AAGATCTTCAATTACATTTCACACCTTGCCCGGCATCAGAGAATCCACACTGGAGAGAAACCTTATAAATGTAATGAATG
TGGTAAGGTATACCGTGAAAGTTCAGCTCTTACAAAGCATCAGAGAATTCACACTGGAGAAAAACCTTACAAATGTAACG
AATGTGGCAAAATGTTCACTCGGAAATCATCCCTACAAAGGCACTGGGAGATTCATACTAGAGAGAAACCTTACAAATGT
AATGAATGTAGCCAAATGTTCAGTCATAAATTATCCCTAGGAGCACACCACAAGATTCATACTGGAGAGAAACCTTACAA
ATGTAATGAATGTGGAGTGGTATTTAATCGTGTTTCACACCTTGCACAACATAAGAGAGTTCACACAGGAGAAAAACCTT
ACAAATGTAAGGAGTGTGGCAAACTGTTCACTCGTAAATCATCCCTAGCACATCACTGGAGGATTCACACTGGAGAGAAA
CCTTACAAATGTAATGAGTGTGAAAAGGTATTCTGTAAAGGTTCAGCCCTTGCACGGCATAAGAGAATTCACACAGGAGA
GAAACCTTCCAAATGTAATGAATGTGGAAAGCTATTCCATGCAAGTTCACAACTTGCACAGCATCAGAGTATTCATACTG
GAGAGAAACCTTACAAATGTAATGAGTGTGGAAAGGTATTCCGTTTAAGGGCATCCCTTGCACGGCATCAGAGAATTCAC
ACTGGAGAAAAACCTTACAAATGTAATGAATGTGGTAAGGTATTCCGTGACTGTTCAGCTCTTATACAACATCGGAGAAT
TCACACTGGAGAGAAACCTTACAAATGCAATGAATGTGGAAAGCTATTCCACGCAAGTTCACAACTTGCACAGCATAGAA
GTATTCATACTGGAGAGAAACCTTACGAATGTAATGAATGTGGAAAAATGTTCACTCGTAAATCATCCCTACGAGTACAC
TGGTGGATTCATACTGGAGAGAAACCTTATAAATGTAATGAATGTGGAAAGGTATTTAAATGTATTTCATACCTTGCAAA
ACATCAGAGAATTCACACTGGAGAAAACTTTAAAAATGTAGTGAAT

Alignment

ORF - retro_ogar_75 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.41 %
• Parental protein coverage: 96.44 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LTSRRDQHERRDSGNKLINTQLGFNMQSHLPELQLFKAEEKSYDCDPMEKSFKSNSLVSPPHRIPSSIKP
          L..RRD....R.S.NKL.N.QLG.N.QS.LPELQLFK..EK.Y.C.PM.....S..LVSP.HRIPS..KP
Retrocopy LPGRRDHCDKRNSVNKLVNIQLGLNTQSYLPELQLFKIKEKIYECNPMDPPINSDFLVSPLHRIPSTMKP

Parental  HLSHEYEFDLTDSLFSPREKAHIGTEHYICTECGKTFNQGLHFTVHQIIHAEEKQFKCDICTMVFNKKSN
          H.SH....DL..SLF...EK..I.TEHY.CTE..K.FNQ..H...HQI.H..E.QFK.DICT.VFNKKS.
Retrocopy HFSHGHKYDLAASLFPQKEKPQIVTEHYKCTEWDKAFNQASHLNIHQIMHEKEDQFKSDICTKVFNKKSS

Parental  LLSHRRIHSGEKPYKCNECGKVFNNISHLVQHRRIHTGEKPYKCNECGKVFNQISHLIQHRRIHTGEKPY
          L..H.R.H...K.YKCNECGK.FN.ISHL..H.RIHTGEKPYKCNECGKV....S.L..H.RIHTGEKPY
Retrocopy LKIHHRVHAVKKTYKCNECGKIFNYISHLARHQRIHTGEKPYKCNECGKVYRESSALTKHQRIHTGEKPY

Parental  KCDECGKVFPQISHLAQHRTIHSAEKPYKCNECGKMFSRYSYLVQHLIIHTGEKPYKCNECGKGFHQISH
          KC.ECGK.F...S.L..H..IH..EKPYKCNEC..MFS....L..H..IHTGEKPYKCNECG..F...SH
Retrocopy KCNECGKMFTRKSSLQRHWEIHTREKPYKCNECSQMFSHKLSLGAHHKIHTGEKPYKCNECGVVFNRVSH

Parental  LTQHRRIHTGEKPFKCSECGRVFSHKSSLACHWRIHTGEKPYKCNECGKVFSDKSNLANHWRIHTGEKPY
          L.QH.R.HTGEKP.KC.ECG..F..KSSLA.HWRIHTGEKPYKCNEC.KVF...S.LA.H.RIHTGEKP.
Retrocopy LAQHKRVHTGEKPYKCKECGKLFTRKSSLAHHWRIHTGEKPYKCNECEKVFCKGSALARHKRIHTGEKPS

Parental  ICNECGKMFSRNSYLVQHLIIHTGEKPHKCNECGKVFNHISHLAQHRRIHTGEKPYKCNECDKVFSHKSS
          .CNECGK.F...S.L.QH..IHTGEKP.KCNECGKVF.....LA.H.RIHTGEKPYKCNEC.KVF...S.
Retrocopy KCNECGKLFHASSQLAQHQSIHTGEKPYKCNECGKVFRLRASLARHQRIHTGEKPYKCNECGKVFRDCSA

Parental  LANHWRIHTGEKPFKCNECGKVFSRNSYLARHLVIHTGEKPYKCNECGKLFSQNSHLANHRRIHTGEKPY
          L..H.RIHTGEKP.KCNECGK.F...S.LA.H..IHTGEKPY.CNECGK.F...S.L..H..IHTGEKPY
Retrocopy LIQHRRIHTGEKPYKCNECGKLFHASSQLAQHRSIHTGEKPYECNECGKMFTRKSSLRVHWWIHTGEKPY

Parental  KCNECGKVFSQNSYLIYHRRIHTGE
          KCNECGKVF...SYL..H.RIHTGE
Retrocopy KCNECGKVFKCISYLAKHQRIHTGE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_75 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000003014	1 retrocopy	retro_ogar_75 ,