RetrogeneDB ID: retro_ogar_726

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873526.1:210769..211522(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CBX7
• Ensembl ID: ENSOGAG00000000029
• Aliases: None
• Description: chromobox homolog 7 [Source:HGNC Symbol;Acc:1557]

Sequence

>retro_ogar_726
ATGGAGCTGTCAGCCATCGGCGAGCAGGTGTTCGCTGTGGAGAGCATCCGGAAGAAGCGCTTGCAGAAGGGTAAAGTGGA
ATATCTGGTGAAGTGGAAAGGATGGCCCCCAAAGTACAGCACGTGGGAGCCAAAAGAGCACATCCTGGACCCCTGCCTCG
TTATGGCCTATGAGGAGAAAGAGGAGAGAGACTGAGCATTGGGGTATAGGAAGAGAGATCCGAAACCCAAGTGGCTTCTG
CTGCAGCAGCTGTACAGCATGGACCTGCAGAGCTCCCACAAGGCCAGGGGCAAGGAGAAGCTGTGCTTCTCTCTGACCCG
CCCACTTGGCAGCGGGAGCCCCGAGGGGGTGGTCAAGGCAGGGGCACCCGAGCTGGTGGACAAGGGCCCCTTGGTGCCCA
CCCTGCCCTTCCCGCTCCGCAAGCCGCGCCAGGCCCACAAGTATCTTCGGTTCTCACGCAAGAAGTTCCCGCCCCGCGGG
CCCAACCTGGAGAGTCACAGCCATTGACGGGAGCTCTTCCTGCAGGAGTCACTAGCCCCAGATGCCCTGCAGGCGGCTAG
CGAGTGGGAGCCCACTGAGCGGCCCCCTGAGGAGGAGGCTGAGGCAGACCTGGCCAAGGGGCCTCCTCCCTGGACACCTG
CGCTCCCCCCAAGTGAGGTAACTATGACTGAGGTCACTGCCAACTCTGTCACCGTCACCTTCCGGGAGGCCCAGGCTGCT
GAGGGCTTCTTCCGAGACCGCAGTGGGAAGTTC

Alignment

ORF - retro_ogar_726 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.3 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEERDRASGYR
          MELSAIGEQVFAVESIRKKR..KGKVEYLVKWKGWPPKYSTWEP.EHILDP.LVMAYEEKEERD.A.GYR
Retrocopy MELSAIGEQVFAVESIRKKRLQKGKVEYLVKWKGWPPKYSTWEPKEHILDPCLVMAYEEKEERD*ALGYR

Parental  KRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTRPLGSGSPEGVVKAGAPELVDKGPLVPTLPFPLR
          KR.PKPK.LLLQ.LYSMDL.SSHKA.GKEKLCFSLTRPLGSGSPEGVVKAGAPELVDKGPLVPTLPFPLR
Retrocopy KRDPKPKWLLLQQLYSMDLQSSHKARGKEKLCFSLTRPLGSGSPEGVVKAGAPELVDKGPLVPTLPFPLR

Parental  KPRKAHKYLRLSRKKFPPRGPNLESHSHRRELFLQESPAPDALQAASEWEPTEQPPEEEAAAEADLAEGP
          KPR.AHKYLR.SRKKFPPRGPNLESHSH.RELFLQES.APDALQAASEWEPTE.PPEEE..AEADLA.GP
Retrocopy KPRQAHKYLRFSRKKFPPRGPNLESHSH*RELFLQESLAPDALQAASEWEPTERPPEEE--AEADLAKGP

Parental  PPWTPALPPSEVTVTDITANSVTVTFREAQAAEGFFRDRSGKF
          PPWTPALPPSEVT.T..TANSVTVTFREAQAAEGFFRDRSGKF
Retrocopy PPWTPALPPSEVTMTEVTANSVTVTFREAQAAEGFFRDRSGKF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_726 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000000029	1 retrocopy	retro_ogar_726 ,