RetrogeneDB ID: | retro_ogar_724 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873526.1:42525348..42526324(+) | ||
| Located in intron of: | ENSOGAG00000000768 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | SCRN3 | ||
| Ensembl ID: | ENSOGAG00000016569 | ||
| Aliases: | None | ||
| Description: | secernin 3 [Source:HGNC Symbol;Acc:30382] |
Retrocopy-Parental alignment summary:
>retro_ogar_724
TACACAGAAATCAATCAAGTTCCTAAAACATATGCTGTTGTCCTTAATGGCCCAGTATGGGTATGGGGGGCAGAAATTGG
AGCTAGTGAGCATGGAGTTTGCACTGGGAATGAAGCTGTATGGGAAAGAGAAAAAGTTTGTAATGAAGAGTCACTGCTGG
GAATGGACCTTGTCAGACTTAGCCTTGAAAGACCAGATCCAGCTGAAAATGCCCTCAATGTCATTGTTGATTTATTGGAA
AAATATGGCCAGGGTGGAAATTGTACAGAGGCGGGTTGATTTTCCACTATAACAATAGTTTCCTGATAGCTGATAGAAAT
GAAGCCTGGATTCTAGAGACTGATGAGAAGGACTGGGCAGCAGAGAAAGTGCAAGAAGGAGTTCATAATATTTCTAATCA
ACTTTCTATAACAACCAAGATTGATTGGGAACACCCAGACATGAGAAAGTAAGCTAAGCTGAAAGGTTGGTGGGATGGTA
AAAAAAAGTGTGATTTTGCTGCAACATACTGCTGTAAGAACCTTGACACAGCCAAGATGATGATTTCATCGGCAGCTACC
ATGAGGACTATAAGCTTCTAAATTAACACAAAGGAAACATAACTCTTGAAACAATGATGAAAATTCTCTGTGATAAACCA
AATGGTGTTAATATAGAGGGTAAATTGCTGATCATGGCAAGAATAGTTTCTATTTTACCTCAAAACTCCACCTTTCCTAG
CATTCATTTTTTTTACAGGAACTCAGAATCCTGACAGGTCTGTTTTTATGCCTTTCATCCTTGTGCCACGTATTTCACAA
CTGTGGGATACACACTCACCAACATTTGAACTTGAAGCTTCAGTTACAGAGAAGCCACATTTTAAGCCTGACAAAAGATA
CCCACTCTTACCAAAAACATCAACAGGCATTGGAAGTAATAGATAAAATGAGGGAAAGTCAAAACGATATTAGACAATGT
GAAGAAACTGGAGAAA
ORF - retro_ogar_724 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 74.1 % |
| Parental protein coverage: | 75.7 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 6 |
Retrocopy - Parental Gene Alignment:
| Parental | YIEIEQVPETYAVVLSRPAWLWGAEMGANEHGVCIGNEAVWGREKVCDEDALLGMDLVRLGLERADTAEK |
| Y.EI.QVP.TYAVVL..P.W.WGAE.GA.EHGVC.GNEAVW.REKVC.E..LLGMDLVRL.LER.D.AE. | |
| Retrocopy | YTEINQVPKTYAVVLNGPVWVWGAEIGASEHGVCTGNEAVWEREKVCNEESLLGMDLVRLSLERPDPAEN |
| Parental | ALNVIVDLLEKYGQGGNCTE-GGMIFTYHNSFLIADRNEAWILETAGKYWAAEKKTEGVRNISNQLSITT |
| ALNVIVDLLEKYGQGGNCTE.GG.IF.Y.NSFLIADRNEAWILET..K.WAAEK..EGV.NISNQLSITT | |
| Retrocopy | ALNVIVDLLEKYGQGGNCTE<GGLIFHYNNSFLIADRNEAWILETDEKDWAAEKVQEGVHNISNQLSITT |
| Parental | KIDREHPDMRNYAKQKGWWDGKKEFDFAATY--SYLDTAKMMTSS-GRYCEGYKLLNKHTGNITFETMME |
| KID.EHPDMR..AK.KGWWDG....DFAATY....LDTAKMM.SS.G.Y.E.YKLLN.H.GNIT.ETMM. | |
| Retrocopy | KIDWEHPDMRK*AKLKGWWDGXXXCDFAATYCCKNLDTAKMMISS<GSYHEDYKLLN*HKGNITLETMMK |
| Parental | ILCDKPSGINMEGEFLTTASMVSILPQDSTLPCI-HFFTGTPDPERSVFKPFIFVPHISQLWDTCSPTFE |
| ILCDKP.G.N.EG..L..A..VSILPQ.ST.P.I....TGT..P.RSVF.PFI.VP.ISQLWDT.SPTFE | |
| Retrocopy | ILCDKPNGVNIEGKLLIMARIVSILPQNSTFPSI>XXXTGTQNPDRSVFMPFILVPRISQLWDTHSPTFE |
| Parental | LEDPVRKKPHFKPDRRHPL-YQKHQQALEVIDN-NKEKAK-TILDNMKKLEK |
| LE..V..KPHFKPD.R.PL.YQKHQQALEVID..N..K.K.TILDN.KKLEK | |
| Retrocopy | LEASVTEKPHFKPDKRYPL>YQKHQQALEVIDK<NEGKSK<TILDNVKKLEK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_724 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000016569 | 1 retrocopy |
retro_ogar_724 ,
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