RetrogeneDB ID: | retro_ogar_635 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873524.1:33403612..33404345(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSOGAG00000027982 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | NFKBIE | ||
| Ensembl ID: | ENSOGAG00000028890 | ||
| Aliases: | None | ||
| Description: | nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon [Source:HGNC Symbol;Acc:7799] |
Retrocopy-Parental alignment summary:
>retro_ogar_635
CCACAGGGACACTGAGCCCTCACTTACATCTCTGAGGACCGAGACACCCGGTCCACCTGGCAGGGATGCATGAGGCCCCA
GCAGTGGTGCTCTACTGTCTGGCTTTGCTGCCCCAGGAGGTCCTGGATATTCAGAATAACCTTTATCAGACAGCACTCCA
CCTGGCTGTACATCTGGACCAGCTGGGTGCAGTTTGGGCACTGGTGATGGAGAGGGCCAGTCGGGTGCTATGTCGGCATG
GTGCCAAGCCCTGCACGAGGCCTGCCAGCGCCAGCACCTGGCCTGTGCCCACTGCGTGCTAGAGGGGCAACCAGAGCCAG
GCAGAGGACCATCTCACTCCCTGGACCTCCAACTGCAAAACTGGCAAGATCTGACCTATCTCCACATCGCCACCCTGAAG
AGGAACCAGCTACTCATGGGACTACTGCTTCAGAATGGAGCTGATACTGATGCACTGGAGGGCACCAGTGGGAACACCGC
ATTGTCCCAGGCGGTGGAAACCCAGGCGCGAGGCCTGGTGCAGTTCCTGCTCCAGTCTGGAGCCCAGGTAGAAGCCTGCA
TTCTGAACGGGTGCACTCTCCTGCACCTGGGGGCTGGCCGGGGCCTCAGTGGCGTCTCATACATTGTGTGCAAGGCAGGT
GCTGACTCCTTGCTACGAAATGTGGAAGATGAGATACCCCAGCACCTGACTGAGGAACCCCTTGTTCTCTTGCCTTTTGA
TGACTTGAAGATC
ORF - retro_ogar_635 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 82.26 % |
| Parental protein coverage: | 67.96 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | PQQLEALTYISEDGDTL-VHLAVIHEAPAVLLCCLALLPQEVLDIQNNLYQTALHLAVHLDQLGAVQALV |
| PQ...ALTYISED.DT..VHLA..HEAPAV.L.CLALLPQEVLDIQNNLYQTALHLAVHLDQLGAV.ALV | |
| Retrocopy | PQGH*ALTYISEDRDTR<VHLAGMHEAPAVVLYCLALLPQEVLDIQNNLYQTALHLAVHLDQLGAVWALV |
| Parental | MKGASRVLQDRHGDT-ALHVACQRQHLACARCLLEAQPEPGRGPSHSLDLQLQNWQGLTCLHIATLKRNQ |
| M..ASRVL..RHG...ALH.ACQRQHLACA.C.LE.QPEPGRGPSHSLDLQLQNWQ.LT.LHIATLKRNQ | |
| Retrocopy | MERASRVLC-RHGAK<ALHEACQRQHLACAHCVLEGQPEPGRGPSHSLDLQLQNWQDLTYLHIATLKRNQ |
| Parental | PLMELLLQNGADIDAQEGTSGKTALHLAVETQERGLVQFLLQSGARVDARMLNGCTPLHLAAGRGLSGIS |
| .LM.LLLQNGAD.DA.EGTSG.TAL..AVETQ.RGLVQFLLQSGA.V.A..LNGCT.LHL.AGRGLSG.S | |
| Retrocopy | LLMGLLLQNGADTDALEGTSGNTALSQAVETQARGLVQFLLQSGAQVEACILNGCTLLHLGAGRGLSGVS |
| Parental | STLCKAGADSLLRNVEDETPQDLTEEPLVLLPFDDLKI |
| ...CKAGADSLLRNVEDE.PQ.LTEEPLVLLPFDDLKI | |
| Retrocopy | YIVCKAGADSLLRNVEDEIPQHLTEEPLVLLPFDDLKI |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_635 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000028890 | 1 retrocopy |
retro_ogar_635 ,
|