RetrogeneDB ID: retro_ogar_615

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873524.1:2558942..2559698(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000025527
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000015243
• Aliases: None
• Description: None

Sequence

>retro_ogar_615
AAGGCCACATTTAAGCTGGCCACCACTGCACTTTTACCATATTCGGCCCTCCAGGAGGAAATGGACAGGAATGAGGACCA
CCCAGCCTTTGTTCTCTTGTACTTCCCCAAGGAGCTGTACCGAGAAGGGGGTGCTGACCAAGGACATGGAGTATTTCTTT
GGTGAATGAAAACTGGGAGGAGCGGGTGCAGTGCTCTGAGTCTGCCCAAAGGTACGTGGATCAGATATAGTACTGAAGGC
AGATTGAGCCGGAGCTGCTGGTGGCCCATGCATACACCAGCTACATGGGGAGACCTCTCAGGTGCCAGGTGCTGAATCAG
GTGGCTCAGCGAGCACTGAAACTCCTCAGCACAGGGGAAGGGACCCAGTTCTGCCTGTTTGAAAATGTGGACAATGCCCA
GCAGTTCAAGCAGTTCTACTTGATGAATGCCCTGGAACTGAACCTGAAGACCAAAGTGAGAATCGTGGAGGGGGCCAGCA
GGGCCTTAAAAGTACAACATATAGATATTCAATGAACTGGACCAGGCTGGCTCCAGGTTTGCCAGAAAGACCGTGGAGGA
TGGGCTCCCTGTGCATGATGGGAAAGGAGATGTGCTGAAGAGCCCTTCCTACGTTGTCCAGCAAGACGAAGGTGCCTGGG
AGGGCAGCAGCTGTCCTAACCCAACAGCCATGGCTGTGTTGAGGAAGCCCAGCCTCCAGCTCGTTCTGGCTATTGGTGTG
GCCCTGGCTGCTGGACTCTCAGCCTGGTACTACATG

Alignment

ORF - retro_ogar_615 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.52 %
• Parental protein coverage: 80.06 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  KELFKLATTALYFTYSALEEEMDRNKDHPAFAPLYFPTELHR-KEALTRDLE-YF-FGENWEEQVQCSEA
          K..FKLATTAL...YSAL.EEMDRN.DHPAF..LYFP.EL.R.K..LT.D.E..F...ENWEE.VQCSE.
Retrocopy KATFKLATTAL-LPYSALQEEMDRNEDHPAFVLLYFPKELYR>KGVLTKDMEYFF>VNENWEERVQCSES

Parental  AQKYVDRIHYIGQNEPELLVAHAYTRYMG-DLSGG-QVLKKVAQRALKLPSTGEGTQFYLFENVDNAQQF
          AQ.YVD.I.Y..Q.EPELLVAHAYT.YMG.DLSG..QVL..VAQRALKL.STGEGTQF.LFENVDNAQQF
Retrocopy AQRYVDQI*Y*RQIEPELLVAHAYTSYMG>DLSGA<QVLNQVAQRALKLLSTGEGTQFCLFENVDNAQQF

Parental  KQFYRARMNALDLNLKTKERIVEEANKAFQ-YNIQIFNELDQAGSTLTRKTLEDGLPVHDGKGDVRKCPY
          KQFY...MNAL.LNLKTK.RIVE.A..A...YNI.IFNELDQAGS...RKT.EDGLPVHDGKGDV.K.P.
Retrocopy KQFYL--MNALELNLKTKVRIVEGASRALK>YNI*IFNELDQAGSRFARKTVEDGLPVHDGKGDVLKSPS

Parental  YIAQQDKGALEGSSCPFRTAMAILRKPSLQFILAIGVALAAGFSAWYYM
          Y..QQD.GA.EGSSCP..TAMA.LRKPSLQ..LAIGVALAAG.SAWYYM
Retrocopy YVVQQDEGAWEGSSCPNPTAMAVLRKPSLQLVLAIGVALAAGLSAWYYM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_615 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000015243	1 retrocopy	retro_ogar_615 ,