RetrogeneDB ID: retro_ogar_554

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873523.1:37970098..37970503(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ALKBH2
• Ensembl ID: ENSOGAG00000028772
• Aliases: None
• Description: alkB, alkylation repair homolog 2 (E. coli) [Source:HGNC Symbol;Acc:32487]

Sequence

>retro_ogar_554
CAGGCGGACAAGATTTTCTGAGAGTTGGAGAAAGAGGTGGAATAGTTTACAGGTGACCTGGCCAGGGTCCAAGTATTTGG
GAAGGGGCACAGCGTGCCAAGGAAGCAGGCAACATACGGAGACTCTGGCCTGACCTACATGTGTTCAGGCCTTCCACTGT
CTCCGGAGCCATGGATCCCAGTTCTAGAGCTCGTCGGGGATCGCGACTCTGGGGTGACTGGACAGACTTTCAACTTCGTG
CTCATCAATAGGTACAAAGACGGCTCTGACCACATTGGGGAGCACCGATATGATGAAAGAGAAATGGCCCCTGGGAGCCC
CATTGCCTCTATCTCCTTTGGTGCCTGTACAGACTTCTTTCAGCATAAGGATTCTCGAGGGAAACACTCCTCCCGGACAG
TGGAG

Alignment

ORF - retro_ogar_554 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.56 %
• Parental protein coverage: 51.71 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EADEIFRELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDTGLTYTFSGLTLSPKPWIPVLELVRDRVS
          .AD.IF.ELEKEVE.FTG.LARVQVFGK.HSVPRKQATYGD.GLTY..SGL.LSP.PWIPVLELV.DR.S
Retrocopy QADKIF*ELEKEVE*FTGDLARVQVFGKGHSVPRKQATYGDSGLTYMCSGLPLSPEPWIPVLELVGDRDS

Parental  GVTGQTFNFVLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFFFRHKDSRGKHSSRRVE
          GVTGQTFNFVLINRYKDG.DHIGEHR.DERE.APGSPIAS.SFGAC.D.FF.HKDSRGKHSSR.VE
Retrocopy GVTGQTFNFVLINRYKDGSDHIGEHRYDEREMAPGSPIASISFGACTD-FFQHKDSRGKHSSRTVE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_554 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000028772	1 retrocopy	retro_ogar_554 ,