RetrogeneDB ID: retro_ogar_519

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873522.1:32178589..32180774(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000015192
• Aliases: None
• Description: None

Sequence

>retro_ogar_519
ACAAGAACATCTATAATTGCAACAATTTCTCCTGCATCTCTCAATCTTAAGAAAACTCTGAGTACCTTGGAATATGCTCA
CAGAGCAAAGAACGTAATGAATAAGCCAGAAGTTAATTAGACACTCACCCAAAAAGCTCTTATTAAGGAATATACGGAAG
AAATAGAGCTCCTGAAGAGAGATCTTGCTGCAGCCCGTGAGAAAAATGGAGTGTACATTTCTGAAGAAAATTTTAGTGCC
ATGAATGGAAAATTAACTGTTCAAGAAGAACAGATTGTGGAACTGATTGAAAAAATTGGTGCTGTTGAGGAGGAACTAAG
TAGGGTTACAGAGTTGTTTATGACTAATAAAAATGAACGTGACCAGTGTAAATATGACCTGCAAAATAAGACCCAGGAAC
TTGAAAGCACTCAAAAACATTTGCAAGAAACTAAATTACAACTTGTTAAAGAAGAATACATCACATCAGTTTTGGAAAGT
ACTGAAGAGAAACTTCGTGACCCTGCTAGCAAGCTGCTTAGCACAGTTGAAGAAACTACAGAAGATGTGTCTGGTCTCCA
TTCCAAACTGGATCAGAAGAAAGCAGTTGATCAACACGATGCAGAAGCTCAGGACATTTTTGGCAAAAACTTAAATAGTC
TATTTAGTAATATGGAAGAATTAATTAAGGATGGCAGCTCAAAACAAAAGGCCATACTAGAAGTTCACAGGACCTTGTTC
GGTAATCTACTGTCTTCCAGTGTCTCTGAATTAGACAGCATGACTACAGTAGCACTTGGATCTCTCAGGTCTAGTCCAGA
AAACGTGTCTACTCATGTTTCTCAGATTCTGAATATGACATTAAAAGAACAGTCATTAGCAGCCGAAAGTAAAACTGTGC
AACAAGAATTGATTAATGTGCTTAAGACTGACCTTCTAAGTTCTCTGGAAATGATTTTATCCTCCACTGTGGTGTCTATA
TTGAAAATCAATAGTCAGCTAAAGCATATTTTTAAGACCTCATTGACTGTGGCTGATAAGATAGAAGATCAGAAAAAGGA
ATTGGATGGCTTCCTCAGTATACTTTGTAATAATCTACATGAACTATAAGAAAATACAATTTCTTCCTTGGCTGAATCAC
AGAAACAATGTGGAATGTATGCTGAAGACCTAAAGACAATAAAGCAAACCCATTCACAGGAACTTGGCCAATTAATCAAT
CTATGGACAGAGAGATTCTGTGCTTTGGAGGAAAAGTTTGAAAACATCCAGAAACCACTTAGTGGTGTCCAAGAAAATAT
ACAGCAGAAATCTAATGATATAATCAACAAAACAACTTTTCAAAATAAAAAATTTTATGCTGATTCAGATGGCTTGTCAC
AGGAACTCAGACATTTTAACCAAGAAGGTACAAGATTGGTTGACGAATCTGTGAAACAATATGATAAACTGAGTACCAAC
CTGGAAAAAATATCTCAAGAGACCGATCAGAGATGTGAGTCTCTGAATACAAGCATAATTTGTTTTTCTGAACAGTGTGC
ATCTTGCTTAAATAAAAGGGAACAAGAACTTCAGAACTTATTGGAGGTTGTAAACCAACGTTGTGAGGCTTCACATTTGG
AGATCACTGAAAAATTAAGTGAACATCAAGCAACTAACGAGAACCAGCGTAACATTTTTCTTGGTCAGATAACTATTGAT
GAAGAAAGATTGACAGCACAAAATCTAGAGCTTAATGAAACTATAAAAATTGGTTTGACTAAGCTTAATTGCTTTCTCCA
ACAGGATCTGAAACTGGATATTTCAACAGGTACAACACCAGAGAGGAAAAATTACTTATACCCATCAACACTGGTGAGAA
TGGAACCCCGTGAACATCTTCTTGATCAGTTGAAAAGGAAACAGCCAGAATGTTAATGATGCTAACTGTTCAGGAAACAA
CACAGAAGAGACCAGTCAGGACACGGATGTAGAAAAGGTGGTTCTGGGGCAGTGCACTGAAGAACCTCTAAGTCAAGAGT
CAGCTGTAGAAGTTGGTGTGGGTTATTCATCAAGCGGTGGAGTTCCATTTCTCCAGCATAAAAAATCACATGGAAAAGAC
AAAGAAAACAGAGGCGTTAACTCAGTAGAGAGGTCTAAAGTGGAAGAAACTACAGAACACTCTGTCCCAAACAGCAGATG
ATCTCTACGAACCCAGACAAAACTT

Alignment

ORF - retro_ogar_519 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.75 %
• Parental protein coverage: 69.03 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  TRTSIIATISPASLNLEETLSTLEYAHRAKNIMNKPEINQKLTKKALIKEYTEEIERLKRDLAAAREKNG
          TRTSIIATISPASLNL..TLSTLEYAHRAKN.MNKPE.N..LT.KALIKEYTEEIE.LKRDLAAAREKNG
Retrocopy TRTSIIATISPASLNLKKTLSTLEYAHRAKNVMNKPEVN*TLTQKALIKEYTEEIELLKRDLAAAREKNG

Parental  VYISEENFSAMNGKLTVQEEQIVELIEKIGAIEEELSRVTELFMTNKNELDQCKYDLQNKTQELESTQKH
          VYISEENFSAMNGKLTVQEEQIVELIEKIGA.EEELSRVTELFMTNKNE.DQCKYDLQNKTQELESTQKH
Retrocopy VYISEENFSAMNGKLTVQEEQIVELIEKIGAVEEELSRVTELFMTNKNERDQCKYDLQNKTQELESTQKH

Parental  LQETKLQLVKEEYITSVLENTEEKLHDAASKLLSTVEETTKDVSGLHSKLDRKKAVDQHNAEAQDIFGKN
          LQETKLQLVKEEYITSVLE.TEEKL.D.ASKLLSTVEETT.DVSGLHSKLD.KKAVDQH.AEAQDIFGKN
Retrocopy LQETKLQLVKEEYITSVLESTEEKLRDPASKLLSTVEETTEDVSGLHSKLDQKKAVDQHDAEAQDIFGKN

Parental  LNSLFSNMEELIKDGSSKQKAILEVHKTLFGKLKSSSVSALDSITTVALGSLRSIPENVSTHVSQILNMI
          LNSLFSNMEELIKDGSSKQKAILEVH.TLFG.L.SSSVS.LDS.TTVALGSLRS.PENVSTHVSQILNM.
Retrocopy LNSLFSNMEELIKDGSSKQKAILEVHRTLFGNLLSSSVSELDSMTTVALGSLRSSPENVSTHVSQILNMT

Parental  LKEQSVAAESKTVQQELINVLKTDLLSSLEMILSSTMVSILKINSQLKHIFKTSLTVADKIEDQKKELDG
          LKEQS.AAESKTVQQELINVLKTDLLSSLEMILSST.VSILKINSQLKHIFKTSLTVADKIEDQKKELDG
Retrocopy LKEQSLAAESKTVQQELINVLKTDLLSSLEMILSSTVVSILKINSQLKHIFKTSLTVADKIEDQKKELDG

Parental  FLSILCNNLHELQENTISSLAESQKQCGIYAEDLKTIEQTHSQELGQLINLWTKRFRALEEKFENIQKPL
          FLSILCNNLHEL.ENTISSLAESQKQCG.YAEDLKTI.QTHSQELGQLINLWT.RF.ALEEKFENIQKPL
Retrocopy FLSILCNNLHEL*ENTISSLAESQKQCGMYAEDLKTIKQTHSQELGQLINLWTERFCALEEKFENIQKPL

Parental  SGVQENIQQKSNDIINKTTFQSKKFYAASDGLSQELRHFNQEGTKLVEESVKQSDKLSTNLEKLSQETDQ
          SGVQENIQQKSNDIINKTTFQ.KKFYA.SDGLSQELRHFNQEGT.LV.ESVKQ.DKLSTNLEK.SQETDQ
Retrocopy SGVQENIQQKSNDIINKTTFQNKKFYADSDGLSQELRHFNQEGTRLVDESVKQYDKLSTNLEKISQETDQ

Parental  RCESLNTSIICFSEQCASCLNKREQELQNLLEVVNQRCEASHLEITEKLSDHKATNENQRNTFLDQITID
          RCESLNTSIICFSEQCASCLNKREQELQNLLEVVNQRCEASHLEITEKLS.H.ATNENQRN.FL.QITID
Retrocopy RCESLNTSIICFSEQCASCLNKREQELQNLLEVVNQRCEASHLEITEKLSEHQATNENQRNIFLGQITID

Parental  EERLIAQNLELNETIKIGLTKLNCFLQQDLKLDISTGTTPERKNYLYPSTLVRTEPREHLLNQLKRKQPE
          EERL.AQNLELNETIKIGLTKLNCFLQQDLKLDISTGTTPERKNYLYPSTLVR.EPREHLL.QLKRKQPE
Retrocopy EERLTAQNLELNETIKIGLTKLNCFLQQDLKLDISTGTTPERKNYLYPSTLVRMEPREHLLDQLKRKQPE

Parental  -LLMML-NCSGNNTEETSQDTDVEKVVLGQCTEEPLSQESAVEVGVDYSSSGGVPFFQHKKSHGKDKENR
          ..LMML.NCSGNNTEETSQDTDVEKVVLGQCTEEPLSQESAVEVGV.YSSSGGVPF.QHKKSHGKDKENR
Retrocopy <MLMML<NCSGNNTEETSQDTDVEKVVLGQCTEEPLSQESAVEVGVGYSSSGGVPFLQHKKSHGKDKENR

Parental  GINSVERSKVEETTEHSVPNSRLPLRAQTNL
          G.NSVERSKVEETTEHSVPNSR..LR.QT.L
Retrocopy GVNSVERSKVEETTEHSVPNSR*SLRTQTKL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_519 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Ciona savignyi	ENSCSAVG00000004560	1 retrocopy	retro_csav_34,
Otolemur garnettii	ENSOGAG00000015192	1 retrocopy	retro_ogar_519 ,