RetrogeneDB ID: retro_ogar_51

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873743.1:1817479..1818997(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000006674
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000009614
• Aliases: None
• Description: None

Sequence

>retro_ogar_51
ATGACTATTTTCCCCAAAAAGAAGTCACCGCCTCCTGATGCTGACGCCACTAACGAGCCGCCAACACCTGGGCCACTGCC
TCCGGAGCCACACTGCAGCGGGGGTGTGGCCATGAGCGGAGGTGGTGATTGTGACCGTGACTTGGGTGTAGTGGGGGCCT
GTGCTAGGGCTTCATCACCACCTCAGGGCCCGCTACAAGGGCCAGAAGGTGCTACTCACAGCTGGGCTCTAGCTGTGCCA
TCGGGTGCAGTGGCAGGTCCCCAGCCACAACAGGCCTCTCCTCCTCCTTGCAGGAGCCCTGGTGGTCCTGGCAGTGTTCC
TGGGGATGAGCTGGGTGCAGCAGCAGTGGCTGCTGGCATGGGCGCTGCCATAAGTGTGTTTGGCTGCTTCTCTGGGTTGG
GACATAGTAAGCGGCTCCGTCAAGCTGCAGGGATTGGTGCTCTTGGTGAAGGCAGTCTTGAGGAAGAGGAGCCTGGCGCA
GGTTACAATAGTGAGGATGAGTATGAAGCAGCTGCTGCACGCATTGAGGCAATGGATCCTGCTACTGTTGAGGAGCAGGA
GCACTGGTTTGAAAAGGCCCTACTAGACAAGAAGGGCTTCATCATTAAGCAGATGAAAGAGGACGGTGCCTGTCTTTTCC
GGGCTGTAGCTGATCAGGTATACGGAGACCAGGATATGCATGAGGTGGTGCGAAAGCACTGCATGGATTATCTGATGAAG
AATGCTGACTATTTCTCCAACTATGTCACAGAAGACTTTGCCACCTATATTAACAGGAAGCGGAAAAACGACTGCCATGG
CAACCACATTGAAATGCAGGCCATGGCAGAAATGTACAACCGTCCCGTGGAGGTATACCAATACAGCACAGAGCCTATCA
ACACATTACATGGGATATATCAAAATGAGGAAGAACCTATTCGTGTAAGCTACCATCAGAATATCCACTATAATTCAGTG
GTAAATCCTAAAAAGGTCACCGTTGGTGTCGGGCTTGGCCTGCCATCATTCAAACCAGGGTTTGTGGACCATTCCCTGAT
GAAGAATGTTATAAAAACATCAGAGGAATCGTGGATTGAGCAGCAGATGCTGGATGACAAGAAACAGGCTTCAGACTGGG
AGGCCACAAACGCGGCCATTGAGGAACAGGTGGCTCGCGAATCCTACCTCCAGTGGCTGCGGGATCAAGAGAAACAGTCT
AGCCAAGTTCCAGGCCCCAGCCAGCCCCGAAAAGCCAGTGCTGCATGCAGTTCAGCAACAGAAGCAGCCTCCAGTGACCT
GGATGAGTGGACCATTGGGTCCCCGATGCATCGCAGTGCAGCCTCTTCACCAGAGCACCCTGAGCTGCATGCTGATCTGG
GCATGAAGCCCCTTTCCCCGGACACTGTTATGGCTCTTGCCAAGCCTCCTTCGCCCTGTGCACTTGGTCTGAATGACTGG
GATGATGATGAGATCCTAGCATCGGTGCTGGCAGTGTCGCGACAAGAATATTTAGACAGTATGAAGAAAAATAAAGTG

Alignment

ORF - retro_ogar_51 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.79 %
• Parental protein coverage: 52.48 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MTILPKKKPPPPDADPTNEPPPPGPLPPAPRRGGGTGV-GGGDRDRDSGVVGARPRASPPPPGPLPGPPG
          MTI.PKKK.PPPDAD.TNEPP.PGPLPP.P...GG....GGGD.DRD.GVVGA..RAS.PP.GPL.GP.G
Retrocopy MTIFPKKKSPPPDADATNEPPTPGPLPPEPHCSGGVAMSGGGDCDRDLGVVGACARASSPPQGPLQGPEG

Parental  ALHRWALAVPPGAVAGPRPQQASPPPCGGPGGPGGVPGDALGAAATGVGAAGVVVGVGAAVGVGSCCSGP
          A.H.WALAVP.GAVAGP.PQQASPPPC.....PGG.PG...G......GAA.V..G.GAA..V..C.SG.
Retrocopy ATHSWALAVPSGAVAGPQPQQASPPPCRS---PGG-PGSVPGDE---LGAAAVAAGMGAAISVFGCFSGL

Parental  GHSKRRRQAPGVGPVAGGSPEREEVGAGYNSEDEYEAAAARIEAMDPATVEQQEHWFEKALRDKKGFIIK
          GHSKR.RQA.G.G....GS.E.EE.GAGYNSEDEYEAAAARIEAMDPATVE.QEHWFEKAL.DKKGFIIK
Retrocopy GHSKRLRQAAGIGALGEGSLEEEEPGAGYNSEDEYEAAAARIEAMDPATVEEQEHWFEKALLDKKGFIIK

Parental  QMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQ
          QMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDF.TYINRKRKN.CHGNHIEMQ
Retrocopy QMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFATYINRKRKNDCHGNHIEMQ

Parental  AMAEMYNRPVEVYQYST
          AMAEMYNRPVEVYQYST
Retrocopy AMAEMYNRPVEVYQYST

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_51 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000007970	1 retrocopy	retro_etel_1096,
Otolemur garnettii	ENSOGAG00000009614	1 retrocopy	retro_ogar_51 ,