RetrogeneDB ID: retro_ogar_443

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873521.1:10992259..10993078(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000025986
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: C19orf66
• Ensembl ID: ENSOGAG00000025421
• Aliases: None
• Description: chromosome 19 open reading frame 66 [Source:HGNC Symbol;Acc:25649]

Sequence

>retro_ogar_443
ATGTCTCAGGAAGGTGTGAAGTTGGAGAAGAGCGTCCGGCGCCTCCGGGAGAAGTTTCATGGCATGGTATCCTCCAAGAA
GGCGGGGGCTCTGATGAGGAAATTCGGCAGTGACCACACAGGCATGGGGCACTCCATAGTGTACGGGGTGAAGCAGAAAG
GTGGGCAGGAACTGAGTAACGACTTGGATGCCCAGGGCTCACCACAGGACATGAAGCAGGACCAGGACATCCAGGCGGTG
GCAACCTCCCTCCTACCACTGATACAAGCCAACCTTCGCACGTTCCAACGTGCCCAGGATAACCTCATCCCTGCTGTGGA
CCGGCAGTTTGCCTGCTCTTCCTGTGACCACGTCTGGTGGCACAGTGTACCCCAGAGAAAGGAGGTATCCCCGTGCCGCA
AATGCCGGAAACGCTACGAGCCAGTGCCAGCCGACAAGATGTGGGGCCTGGCTGAGTTCCACTGCCCGAAGTGTCGGCAC
AACTTCCGGGGCTGGGCATAGATGGGGTCCCCATCCCCCTGCTATGGGTGCGGCTTCCCTATGTATCCAACGTGGATCCT
ACCTCCACGCTGGGACCGGGACCTGGATCGCTGCAGTACCCACACTCACTCCTGCTCGCCAGCTGACTGCTACAACAGGC
GAGAGCCCCATGTGCCTGGGACATCCTGTGCGCACTCCAAGAGCCAGAAGCAGAATCACGTGCCCAAAGTCCTCCACCCC
AGCAACCCCCATATCAGCAGTGGCTCTACTGCAGCCACCTGCCTGAGCCAGGGTGGCCTCCAGGAAGACCTGGACAACCT
TATCCTTGAGGACCTAAAA

Alignment

ORF - retro_ogar_443 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.58 %
• Parental protein coverage: 93.81 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSQEGVELEKSVRRLREKFHGKVSSKKAGALMRKFGSDHTGVGRSIVYGVKQKDGQELSNDLDAQDPPED
          MSQEGV.LEKSVRRLREKFHG.VSSKKAGALMRKFGSDHTG.G.SIVYGVKQK.GQELSNDLDAQ..P.D
Retrocopy MSQEGVKLEKSVRRLREKFHGMVSSKKAGALMRKFGSDHTGMGHSIVYGVKQKGGQELSNDLDAQGSPQD

Parental  MKQDQDIQAVATSLLPLTQANLRMFQRAQDDLIPAVDRQFACSSCDHVWWRRVPQRKEVSRCRKCRKRYE
          MKQDQDIQAVATSLLPL.QANLR.FQRAQD.LIPAVDRQFACSSCDHVWW..VPQRKEVS.CRKCRKRYE
Retrocopy MKQDQDIQAVATSLLPLIQANLRTFQRAQDNLIPAVDRQFACSSCDHVWWHSVPQRKEVSPCRKCRKRYE

Parental  PVPADKMWGLAEFHCPKCRHNFRGWAQMGSPSPCYGCGFPVYPTRILPPRWDRDLDRRSTHTHSCSAADC
          PVPADKMWGLAEFHCPKCRHNFRGWA.MGSPSPCYGCGFP.YPT.ILPPRWDRDLDR.STHTHSCS.ADC
Retrocopy PVPADKMWGLAEFHCPKCRHNFRGWA*MGSPSPCYGCGFPMYPTWILPPRWDRDLDRCSTHTHSCSPADC

Parental  YNRREPHVPGTSCAHPKSRKQNHLPKVLHPSNPHISSGSTVATCLSQGGLQEDLDNLILEDLK
          YNRREPHVPGTSCAH.KS.KQNH.PKVLHPSNPHISSGST.ATCLSQGGLQEDLDNLILEDLK
Retrocopy YNRREPHVPGTSCAHSKSQKQNHVPKVLHPSNPHISSGSTAATCLSQGGLQEDLDNLILEDLK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_443 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000025421	1 retrocopy	retro_ogar_443 ,