RetrogeneDB ID: retro_ogar_434

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873521.1:7205898..7207198(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ABCB7
• Ensembl ID: ENSOGAG00000032555
• Aliases: None
• Description: ATP-binding cassette, sub-family B (MDR/TAP), member 7 [Source:HGNC Symbol;Acc:48]

Sequence

>retro_ogar_434
TACACAGCCTTCACAGTTGCAGTCACACGGTGGAAACGAGGTTTAGAACAGAGATGAACCAGCGGATAATGAGGCAGGTA
ATGCTGCTATAGAGTCACTGCTGAACCATGAAACTGCGAAGTATTTTAATAATGAAAAATACGAAGCACAGAGATACGAT
GGATTTCTGAAGACACATGAGACTGCTTCATTGAAAAATACCTCTACTCCGGCTATGCTGAGCTTTGGTTAAAGTGCTAT
TTCCAGCATTGGTTTAACAGCTATGATGGTGCTCGCCAGTCAGGGAATTGTGGCGGGCACCCTTACGGTTGGAGATCTAG
TAATGATGAATGGACTGCTTTTTCAGCTTTCATTACCCCTTAACTTTCTGGGGACTGTATATAGAGAGATCAGACAAGCA
CTCATAGATATGAACACCTTGTTCACTCTACTCAAGGCAGACACCCAAATTAAAGAACAAAGTGATGGCACCTTCCCTTC
AGGTCACACAACAGACAACCGTGGTGGCCTTTGATGATGTGCATTTTGAATGCAGAGGGGCAGAAAGTCCTTAGTGCACT
ATCTTTTGAAGTTTCTGCAGGAAAGAAAGTGGCCATTGTAGGAGGTAGTGGGTCAGGGAAAAGCACAATAGTAAGCTATT
GTTTTGCTTCTATGGGCCTCAAAAGGTAACATTTACCTTGCTGGTCAAAATACACAAGACGTGAGCCTGGAAAGCCTTCG
GAGGGCAATGGGAGTGGTACCACAGGATGCTGTCCTCTTCCATAATGCTACTTACTACAATCTCGTACACGGAAACCTCA
GTGCTTTGCCTGAGGAAGTGTATGCAGTGGCAAAATTAGCTGGACTTCATGATGCACTTCTTCGAATGTCACATGGACAT
GACACTCCAGTTGGGGAACGAGGATTCAAGCTTTCAGGAGGAGAAAAGCAAAGAGTCACAATGGCAAGAGCCATTTTGAA
GGACCCCCCAGTCCTAGTCTATGAAGGAGCCACAGATTCAGTTACTGAAGAGACTATTCCTGGTGCCATGAGAGATATGG
TCAAACGCAGAGCTTCTATTTTCATTGCGCACAGATTGTCAATGGTGATCGATGCCGATGAAATCATTGTCTCGGACCAG
GGTAAGGTAGCTGAACATGGTACTTACCAAGGCTTGCTTGCTAAACCCAGCAGTATCTATTCAAAAATGTAGAATACACA
GAGTAGCCGTGTGAAGAACCATGGTAACCCCAAATGGGTCACAAAGAAAGAAAATGTGTCCAAAGAAGAGGAAAGGAAGA
AACTACAAGAAGAAATTGTC

Alignment

ORF - retro_ogar_434 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.02 %
• Parental protein coverage: 58.17 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 7

Retrocopy - Parental Gene Alignment:

Parental  YTAFTVAVTRWR-TRFRIEMNK-ADNDAGNAAIDSLLNYETVKYFNNEKYEAQRYDGFLKTYETASLKST
          YTAFTVAVTRW..TRFR.EMN..ADN.AGNAAI.SLLN.ET.KYFNNEKYEAQRYDGFLKT.ETASLK.T
Retrocopy YTAFTVAVTRWK<TRFRTEMNQ<ADNEAGNAAIESLLNHETAKYFNNEKYEAQRYDGFLKTHETASLKNT

Parental  STLAMLNFGQSAIFSIGLTAIMVLASQGIVAGTLTVGDLVMVNGLLFQLSLPLNFLGTVYRETRQALIDM
          ST.AML.FG.SAI.SIGLTA.MVLASQGIVAGTLTVGDLVM.NGLLFQLSLPLNFLGTVYRE.RQALIDM
Retrocopy STPAMLSFG*SAISSIGLTAMMVLASQGIVAGTLTVGDLVMMNGLLFQLSLPLNFLGTVYREIRQALIDM

Parental  NTLFTLLKVDTQIKD-KVMAPSLQITPQTATVAFDDVHFE-YIEGQKVL-SGISFEVPAGKKVAIVGGSG
          NTLFTLLK.DTQIK..KVMAPSLQ.T.QT..VAFDDVHFE....G.K.L.S..SFEV.AGKKVAIVGGSG
Retrocopy NTLFTLLKADTQIKE>KVMAPSLQVTQQTTVVAFDDVHFE<MQRGRKSL<SALSFEVSAGKKVAIVGGSG

Parental  SGKSTIV-RLLFRFYEPQ-KGSIYLAGQNIQDVSLESLRRAVGVVPQDAVLFHNTIYYNLLYGNISASPE
          SGKSTIV..LLF.FY.PQ.KG.IYLAGQN.QDVSLESLRRA.GVVPQDAVLFHN..YYNL..GN.SA.PE
Retrocopy SGKSTIV<KLLFCFYGPQ<KGNIYLAGQNTQDVSLESLRRAMGVVPQDAVLFHNATYYNLVHGNLSALPE

Parental  EVYAVAKLAGLHDAILRMPHGYDTQVGERGLKLSGGEKQRVAIARAILKDPPVILYDEATSSLDSITEET
          EVYAVAKLAGLHDA.LRM.HG.DT.VGERG.KLSGGEKQRV..ARAILKDPPV..Y..AT...DS.TEET
Retrocopy EVYAVAKLAGLHDALLRMSHGHDTPVGERGFKLSGGEKQRVTMARAILKDPPVLVYEGAT---DSVTEET

Parental  ILRAMRDMVKHRTSIFIAHRLSTVIDADEIIVLDQGKVAEHGTHHDLLANPGSIYSEMWHTQSSRVQNHG
          I..AMRDMVK.R.SIFIAHRLS.VIDADEIIV.DQGKVAEHGT...LLA.P.SIYS.M..TQSSRV.NHG
Retrocopy IPGAMRDMVKRRASIFIAHRLSMVIDADEIIVSDQGKVAEHGTYQGLLAKPSSIYSKM*NTQSSRVKNHG

Parental  NPKWVAKKENVSKEEERKKLQEEIV
          NPKWV.KKENVSKEEERKKLQEEIV
Retrocopy NPKWVTKKENVSKEEERKKLQEEIV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_434 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000032555	1 retrocopy	retro_ogar_434 ,