RetrogeneDB ID: retro_ogar_36

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873565.1:2830680..2834004(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000029981
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000003792
• Aliases: None
• Description: None

Sequence

>retro_ogar_36
GGAAGGAACAAGGCGAAGTCTACCTGCAGTTGCCCTGACGTGCAGCCCAATGGGCAGGATTTGGGCGAGAGCGGCCGGGT
TGCCCGTCTAGGAGCAGATGAATCTGAGGACGAGCGACGGAGGAGGGGGTCTCTCAGTAATGCTGGAGACCCTGAGATCG
TCAAGTCTCCCAGCGACCCCAAGCAATACCGATACATCAAATTACGGAATGGCTTGCAGGCACTTTTGATTTCAGACCTA
ACTAATATGGAAGGTAAAACAGGAAATGCAATAGATGATGAAGATGAGGAAGAAGAAGAAGAAGAAGAAGATGATGATGA
TGATGATGAAGATTCTGGAGCTGAAATAGAAGATGATGATGAAGAGGGTTTAGATGATGAAGATGAGTTTGATGATGATG
ATGATGAACATGATGATGATGATCTTGATACTGAGGATAATGAATTGGAAGAAATAGAAGAGAGAGCAGAAGCTAGAAAG
AAAACCACTGAAAAACAGTCTGCAGCGGCTCTTTGTGTTGGAGTTGGGAGTTTTGCTGATCCAGATGACCTGCCTGGGCT
GGCACACTTTTTGGAGCACATGGTATTCATGGGTAGTTTGAAATATCCAGATGAGAATGGGTTTGATGCCTTCCTGAAGA
AACATGGGGGTAGTGATAATGCCTCAACTGATTGTGAACGCACAGTCTTTCAGTTTGATGTCCAGAGAAAATACTTCAAG
GAAGCCCTGGATAGATGGGCCCAGTTCTTCATCCATCCACTAATGATCAGAGATGCAATTGACCGTGAAGTTGAAGCTGT
TGATAGTGAATATCAACTCGCAGGACCTTCTGATGCAAACAGAAAGGAAATGTTATTTGGAAGCCTTGCTAGACCTGGAC
ATCCTATGGGGAAATTTTTTTGGGGAAATGCTGAGACTCTCAAGCATGAGCCAAAAAAGAATAATATTGATACACATGCT
AGATTGAGAGAATTCTGGATGCGATACTACTCTGCTCATTACATGACTTTAGTGGTTCAATCCAAAGAAACACTGGATAC
TTTAGAAAAGTGGGTGACTGAAATCTTCTCTCAGATACCAAACAATGGGTTACCCAAACCAAACTTCGGCCATTTAACGG
ATCCATTTGACACACCAGCATTTAACAAACTTTATAGAGTTGTTCTAATCAGAAAAATTCATGCTCTGACCATCACATGG
GCACTTCCCCCTCAACAGCAACATTACAGAGTGAAGCCACTTCATTATATCTCCTGGCTGGTTGGACATGAAGGCAAAGG
AAGCATTCTTTCTTACCTAAGAAAAAAATGCTGGGCTCTTGCACTGTTTGGTGGAAATGGTGAGACAGGATTTGAGCAAA
ATTCTACTTATTCAGTGTTCAGCATTTCTATTACCTTGACTGATGAGGGTTATGAACATTTCTATGAGGTTGCTTATACC
GTCTTCCAGTATTTAAAAATGCTCCAGAAGCTAGGTCCAGAGAAAAGAATTTTTGAAGAGATTCAGAAAATTGAGGATAA
TGAATTTCATTACCAAGAACAGACAGATCCAGTTGAGTATGTGGAGAACATGTGTGAAAACATGCAACTGTATCCACTGC
AGGACTTCCTCACAGGAGATCAGCTGCTTTTTGAATATAAGCCGGAAGTCATTGCTGAAGCCCTTAATCAACTAGTTCCT
CAGAAAGCAAATCTTGTTCTACTGTCTGGTGCTAATGAGGGAAAATGTGACCTCAAGGAGAAATGGTTTGGGACTCAGTA
TAGTATTGAAGATGTTGATAACTCTTGGGCTGAACTATGGAAGAGTGATTTCGAATTAAATTCAGAACTTCATCTTCCAG
CCGAAAACAAGTATATAGCCACCGACTTCACATTGAAGGCTTTTGATTGTCCTGAAACAGAATACCCTGTTAAAATTGTG
AATACTCCACAAGGTTGCCTGTGGTATAAGAAAGACAACAAATTCAAGATCCCCAAAGCATATATACGTTTCCATCTAAT
TTCACCTTTGATACAGAAGTCTGCAGCAAATGTGGTTCTCTTTGATATTTTTGTCAATATCCTTACCCATAACCTCGCGG
AACCAGCTTATGAAGCAGATGTGGCTCAGCTGGAGTATAAACTGGTAGCTGGTGAACATGGTTTAATTATTCGAGTGAAA
GGATTCAACCACAAACTACCTCTACTCTTTCAGCTTATTATTGACTATTTAGCTGAGTTCAGCTCTACACCAGCTGTCTT
TACCATGATAACTGAGCAGTTGAAGAAGACCTACTTTAACATCCTCATCAAGCCCGAGACTCTGGCCAAAGATGTGCGGC
TTTTAATCCTGGAATATGCCCGTTGGTCGATGATTGACAAGTACCGGGCTTTGATGGATGGCCTTTCCCTTGAGTCTCTG
CTGAGCTTTGTTAAAGAGTTCAAATCCCAGCTCTTTGTTGAGGGCCTGGTACAAGGGAATGTCACAAGCACAGAATCTAT
GGATTTCCTCAGATATGTTGTTGATAAGCTGAAATTCATGCCTCTGGAACAGGAGATGCCTGTGCAGTTCCAGGTGGTAG
AGCTGCCCAGTGGCCACCACCTGTGCAAAGTGAAAGCTCTGAACAAGGGTGATGCCAACTCTGAAGTCACTGTGTACTAC
CAGTCAGGTACGAGGAGTCTGAGAGAATACACTCTTATGGAGCTGCTTGTGATGCACATGGAGGAGCCTTGTTTTGACTT
CCTTCGAACCAAACAGACTCTTGGGTACCATGTATACCCTACCTGTAGGAACACATCTGGGATTCTAGGATTCTCTGTCA
CCGTGGGAACACAGGCAACCAAGTACAACTCTGAAGTTGTTGATAAGAAGATAGAAGAGTTTCTTTCTAGCTTTGAAGAG
AAGATTGAGAACCTCACTGAAGATGCATTCAACACCCAGGTCACAGCTCTCATCAAGCTGAAGGAGTGTGAGGACACCCA
CCTTGGGGAGGAGGTGGATAGGAACTGGAACGAAGTGGTGACACAGCAGTATCTCTTTGATCGTCTTGCTCATGAGATTG
AAGCACTGAAGTCATTCTCAAAATCAGACCTGGTCAACTGGTTCAAGGACCATAGAGGACCAGGGAGTAAAATGCTCAGC
GTTCATGTTGTTGGATACGGGAAGTACGAGCTGGAAGAAGACAGCACCCCTTCTGGTGAAGATTCAAATTCTTCTTGTGA
AGTGATGCAGCTAACCTACCTGCCAACCTCTCCTGTGCTGGCAGATTCCGTCATCCCCATTACTGATATCAGGGCTTTCA
CAGCAACACTCAACCTTCTCCCCTACCACAAAATAGTCAAATAA

Alignment

ORF - retro_ogar_36 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.43 %
• Parental protein coverage: 87.06 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EQQGETDTVLSAAALCVGVGSFADPDDLPGLAHFLEHMVFMGSLKYPDENGFDAFLKKHGGSDNASTDCE
          E....T....SAAALCVGVGSFADPDDLPGLAHFLEHMVFMGSLKYPDENGFDAFLKKHGGSDNASTDCE
Retrocopy EARKKTTEKQSAAALCVGVGSFADPDDLPGLAHFLEHMVFMGSLKYPDENGFDAFLKKHGGSDNASTDCE

Parental  RTVFQFDVQRKYFKEALDRWAQFFIHPLMIRDAIDREVEAVDSEYQLARPSDANRKEMLFGSLARPGHPM
          RTVFQFDVQRKYFKEALDRWAQFFIHPLMIRDAIDREVEAVDSEYQLA.PSDANRKEMLFGSLARPGHPM
Retrocopy RTVFQFDVQRKYFKEALDRWAQFFIHPLMIRDAIDREVEAVDSEYQLAGPSDANRKEMLFGSLARPGHPM

Parental  GKFFWGNAETLKHEPKKNNIDTHARLREFWMRYYSAHYMTLVVQSKETLDTLEKWVTEIFSQIPNNGLPK
          GKFFWGNAETLKHEPKKNNIDTHARLREFWMRYYSAHYMTLVVQSKETLDTLEKWVTEIFSQIPNNGLPK
Retrocopy GKFFWGNAETLKHEPKKNNIDTHARLREFWMRYYSAHYMTLVVQSKETLDTLEKWVTEIFSQIPNNGLPK

Parental  PNFGHLTDPFDTPAFNKLYRVVPIRKIHALTITWALPPQQQHYRVKPLHYISWLVGHEGKGSILSYLRKN
          PNFGHLTDPFDTPAFNKLYRVV.IRKIHALTITWALPPQQQHYRVKPLHYISWLVGHEGKGSILSYLRK.
Retrocopy PNFGHLTDPFDTPAFNKLYRVVLIRKIHALTITWALPPQQQHYRVKPLHYISWLVGHEGKGSILSYLRK-

Parental  HRCWALALFGGNGETGFEQNSTYSVFSISITLTDEGYEHFYEVAYTVFQYLKMLQKLGPEKRIFEEIQKI
          ..CWALALFGGNGETGFEQNSTYSVFSISITLTDEGYEHFYEVAYTVFQYLKMLQKLGPEKRIFEEIQKI
Retrocopy -KCWALALFGGNGETGFEQNSTYSVFSISITLTDEGYEHFYEVAYTVFQYLKMLQKLGPEKRIFEEIQKI

Parental  EDNEFHYQEQTDPVEYVENMCENMQLYPLQDFLTGDQLLFEYKPEVIAEALNQLVPQKANLVLLSGANEG
          EDNEFHYQEQTDPVEYVENMCENMQLYPLQDFLTGDQLLFEYKPEVIAEALNQLVPQKANLVLLSGANEG
Retrocopy EDNEFHYQEQTDPVEYVENMCENMQLYPLQDFLTGDQLLFEYKPEVIAEALNQLVPQKANLVLLSGANEG

Parental  KCDLKEKWFGTQYSIEDVDNSWAELWKSDFELNSELHLPAENKYIATDFTLKAFDCPETEYPVKIVNTPQ
          KCDLKEKWFGTQYSIEDVDNSWAELWKSDFELNSELHLPAENKYIATDFTLKAFDCPETEYPVKIVNTPQ
Retrocopy KCDLKEKWFGTQYSIEDVDNSWAELWKSDFELNSELHLPAENKYIATDFTLKAFDCPETEYPVKIVNTPQ

Parental  GCLWYKKDNKFKIPKAYIRFHLISPLIQKSAANVVLFDIFVNILTHNLAEPAYEADVAQLEYKLVAGEHG
          GCLWYKKDNKFKIPKAYIRFHLISPLIQKSAANVVLFDIFVNILTHNLAEPAYEADVAQLEYKLVAGEHG
Retrocopy GCLWYKKDNKFKIPKAYIRFHLISPLIQKSAANVVLFDIFVNILTHNLAEPAYEADVAQLEYKLVAGEHG

Parental  LIIRVKGFNHKLPLLFQLIIDYLAEFSSTPAVFTMITEQLKKTYFNILIKPETLAKDVRLLILEYARWSM
          LIIRVKGFNHKLPLLFQLIIDYLAEFSSTPAVFTMITEQLKKTYFNILIKPETLAKDVRLLILEYARWSM
Retrocopy LIIRVKGFNHKLPLLFQLIIDYLAEFSSTPAVFTMITEQLKKTYFNILIKPETLAKDVRLLILEYARWSM

Parental  IDKYRALMDGLSLESLLSFVKEFKSQLFVEGLVQGNVTSTESMDFLRYVVDKLKFMPLEQEMPVQFQVVE
          IDKYRALMDGLSLESLLSFVKEFKSQLFVEGLVQGNVTSTESMDFLRYVVDKLKFMPLEQEMPVQFQVVE
Retrocopy IDKYRALMDGLSLESLLSFVKEFKSQLFVEGLVQGNVTSTESMDFLRYVVDKLKFMPLEQEMPVQFQVVE

Parental  LPSGHHLCKVKALNKGDANSEVTVYYQSGTRSLREYTLMELLVMHMEEPCFDFLRTKQTLGYHVYPTCRN
          LPSGHHLCKVKALNKGDANSEVTVYYQSGTRSLREYTLMELLVMHMEEPCFDFLRTKQTLGYHVYPTCRN
Retrocopy LPSGHHLCKVKALNKGDANSEVTVYYQSGTRSLREYTLMELLVMHMEEPCFDFLRTKQTLGYHVYPTCRN

Parental  TSGILGFSVTVGTQATKYNSEVVDKKIEEFLSSFEEKIENLTEDAFNTQEQVTALIKLKECEDTHLGEEV
          TSGILGFSVTVGTQATKYNSEVVDKKIEEFLSSFEEKIENLTEDAFNTQ..VTALIKLKECEDTHLGEEV
Retrocopy TSGILGFSVTVGTQATKYNSEVVDKKIEEFLSSFEEKIENLTEDAFNTQ--VTALIKLKECEDTHLGEEV

Parental  DRNWNEVVTQQYLFDRLAHEIEALKSFSKSDLVNWFKDHRGPGSKMLSVHVVGYGKYELEEDSTPSGEDS
          DRNWNEVVTQQYLFDRLAHEIEALKSFSKSDLVNWFKDHRGPGSKMLSVHVVGYGKYELEEDSTPSGEDS
Retrocopy DRNWNEVVTQQYLFDRLAHEIEALKSFSKSDLVNWFKDHRGPGSKMLSVHVVGYGKYELEEDSTPSGEDS

Parental  NSSCEVMQLTYLPTSPVLADSVIPITDIRAFTATLNLLPYHKIVK
          NSSCEVMQLTYLPTSPVLADSVIPITDIRAFTATLNLLPYHKIVK
Retrocopy NSSCEVMQLTYLPTSPVLADSVIPITDIRAFTATLNLLPYHKIVK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_36 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000003792	1 retrocopy	retro_ogar_36 ,