RetrogeneDB ID: retro_ogar_35

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873662.1:2009081..2011796(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000026041
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000034156
• Aliases: None
• Description: None

Sequence

>retro_ogar_35
ATGTGCGAGAGTTACTCCAGGTCGCTGTTGAGGGTCTCCGTGGCGCAGATCTGCCAGGCACTGGGGTGGGACTCTGTGCA
GCTCAGCGCCTGCCATCTCCTCACAGACGTGCTAGAACGCTATCTGCAGCAGCTGGGCCGGGGCTGCCAGCGATACTCTG
AGCTGTATGGCCGAACAGACCCAACTTTGGATGACGTTGGTGAAGCTTTCCAACTTATGGGGGTTAGTCTGCATGAATTA
GAAGACTATATTCACAATATTGAACCTGTCACTTTCCCATATCAAATTCCTTCATTTCCTGTTAGCAAAAACAATGTACT
TCAGTTTCCTCAACCTGGAAGTAAAGATGCAGAAGAAAGAAAAGAATATATTCCTGATTACATGCCACCCATAGTGTCTT
CTCAAGAAGAGGAGGAGCAGGTGCCTACAGATGAGGGCACCTCAGCAGAAGCCAGGCAGCTTCCCCTGGAAGAGAATGAC
AAACTGGAGGAGGCAGAAATTATTAATGATGAGAATTTCCTGGGTAAGAGACCACTGGACAGCCCTAAAGCTGAAAAAAT
ACCTGACGTGAAGCGGCCCCGACTGCTAAGTACGAAAGGGGACAGCCTGGAGGTCCTGTTATTGGAAGCTCGAGAACCCC
TTAGCACAATAAATACACACAAGGTCCTGCACATGTTCCCTCCAGTACATGTGCAGGACAGCACAGACCTCGCCCCTGCA
TCCCCAGAGTCACCAATGTTGGCTCCAGTTGCAAAATCACAGTTGCCAACTGCAAAACCATCAGAAACCAAGTTTTTTAC
ACTTAAAACAAAAACTATTAGTAGTTCTCCAGAACAGAAGACTGAGTCACCTAAAACTACCCTCTCACCAGTAATAGTTG
GAAGTCCTACCTGGTCACCAAAAACAGTGAAGAAATCTCCAGGATTTTCTAAGAGTCCCAAGAGCCCCAAGGTTCTGACT
CATATTCCTCAAGTACCCATCAGACCAGAAACACCAAATAGGACTCCTCCAGCCACAGTAAGTGAAAAGATCAGTAAAGA
GGAAGTTCAGGTGAAGCAGACACAAACATCCCCTGATGCCAGGATGCTGAGCAATGAGAATCAGCCAAAAAAGGCTATGG
TGACAGATAAAACTATCGATGACTCTATTGATGCTGTGATTGCACGTGCCTGTGCTGAAGGAGAGCCAGATCCTTTTGAA
TTCTCTTCTGGATCAGAATCTGAGGGAGACATTTTTACCAGCCCCAAAACAATTTCAGGTTGGGAGTGCACCACTCCAAA
AGCCACTTCCTCAATCAATTTTGTGAAGTCAGGATCTACTCCTCTGCCTCTTTCGGGTGGAACTTCAGGTTCTGATAACT
CCTGCACAAAGGACACCTTGACTGATGAGGTTGTGGGGAAAGCAAAACTGGGAATGCCTTCAAATATGCCTCAGAACTTT
CCTTATAACTCTACTTCCATGTCTGTTCCCACTCCTGATCCTCTCCACAACCTGTATGAAGAGAAAGCCAACCTGCCTTT
GTCAGTGGAGGTGAAGAAGAAATTGAAAAAGGAACTAAAGACTAAATTGAAAAAGAAAGAAAAGCAGAGAGACAGGGAGA
GGGAAAATGACAGAAACAAGGAAAAAAGCACAGATAAGGAAAATAAAGTAAAAGAGAAAGAAAAGGAAGCAAACAAGGAA
ACAAAGTATCCCTGGAAGGAGTTCCTGAAAGATGAGGACTCAGATCCCTACAAGTTTAAAATAAAAGAATTTGTAGATAT
TGATCCAAGGGTGAAACTGAAAGATGGAATTGTGAGGAAGGAGAAAGAGAAGCATAAAGATAAGAAAAAAAATAGAGAAA
AAGGTAAGAAAGATAAAGAGAAAAGAGAAAGAGAGAAGATGAAAGACAAAGGCAGGGAAAGTCAGATGAAGGCAGCTCCA
GCCCCTCTGGAGTGGCCCCCTTTGAGCCCCACAGCAGCCAGGCTCCCCACCCTGCTGCCCTCCTTGGCGCCAGTGCTGCA
GGAAAAACTATTGGAGGGAAAAGTGAAGCCTAAGGAGAAAGAAAGGAAAAAAGACAAAAAGGAGAAGAAAAAGAAGGAAA
AACAGAAGAAAGAGGAAGGAGAGAAAGAAAAAAGAGAACGAGAGAAGAAAGAAAAAGAAAAGGAGAAGCACAACCATGAA
AAAATAAAAGTGGAGCCAATCGTCACAACCCCAAGCCCGGTTATCCCCAGATTAACCCTCCGAGTCGGTGCTGGCCAAGA
CAAGATTGTCATCAGCAAAGTGGTCCCCGCCCCCGAGGGGAGGCTGGCTCCCTGCCTGAATCGGCCCAAGACGCCGCCCC
CGGCCACGGAGGCCCGAGCCCCCCACCCCACGCACGGGGGCCCCGTGTCCCCACTGCGCCCCCTCGCGCCCCCTGCAGGC
CCAGCGCTGCTGCTGCCCTCCCTGGGTCCCATGGTGGCCCGCAGCGCCAAGGGCCTGGTGCGCAGCGTGGTGACCGAGAC
CGTCAGCACTTACGTGATCCGAGATGAGTGGGGCAATCAGATCTGGATCTGCCCTGGGTGTAACAAGCCTGACGACGGGA
GTCCCATGATCGGCTGTGACGACTGCGATGATTGGTACCACTGGCCCTGTGTCGGAGTAGTGGCTGCACCGCCAGAGGAG
ACTCAGTGGTTCTGTCCCAAGTGTGCCAGCAAAAAGAAAGATAAAATGCACAAAAAGAGGAAGCACCGAGCACGC

Alignment

ORF - retro_ogar_35 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.11 %
• Parental protein coverage: 77.83 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MCESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPILDDVSEAF
          MCESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVL.RYLQQLGRGC.RYSELYGRTDP.LDDV.EAF
Retrocopy MCESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLERYLQQLGRGCQRYSELYGRTDPTLDDVGEAF

Parental  QLMGVSLHELEDYIHNIEPVTFPHQIPSFPVSKNNVLQFPQPGSKDAEERKEYIPDYMPPIVSSQEEEEE
          QLMGVSLHELEDYIHNIEPVTFP.QIPSFPVSKNNVLQFPQPGSKDAEERKEYIPDYMPPIVSSQEEEE.
Retrocopy QLMGVSLHELEDYIHNIEPVTFPYQIPSFPVSKNNVLQFPQPGSKDAEERKEYIPDYMPPIVSSQEEEE-

Parental  EQVPTDGGTSAEAMQVPLEEDDELEEEEIINDENFLGKRPLDSPEAEEMPATKRPRLQSTKGDSLDVVLL
          .QVPTD.GTSAEA.Q.PLEE.D.LEE.EIINDENFLGKRPLDSP.AE..P..KRPRL.STKGDSL.V.LL
Retrocopy -QVPTDEGTSAEARQLPLEENDKLEEAEIINDENFLGKRPLDSPKAEKIPDVKRPRLLSTKGDSLEVLLL

Parental  EAREPLSSINTQKVPPMLSPVHVQDSTDLAPASPEPPMLAPVAKSQLPSAKPLETKSFAPRTKTKTSSPG
          EAREPLS.INT.KV..M..PVHVQDSTDLAPASPE.PMLAPVAKSQLP.AKP.ETK.F...TKT..SSP.
Retrocopy EAREPLSTINTHKVLHMFPPVHVQDSTDLAPASPESPMLAPVAKSQLPTAKPSETKFFTLKTKTISSSPE

Parental  QKTKSPKTTPSPAMVGSPIRSPKTMSKEKKSPGRSKSPKSPKSPKVLPHIPQVPVRPETPNRTPPATVSE
          QKT.SPKTT.SP..VGSP..SPKT....KKSPG.S...KSPKSPKVL.HIPQVP.RPETPNRTPPATVSE
Retrocopy QKTESPKTTLSPVIVGSPTWSPKTV---KKSPGFS---KSPKSPKVLTHIPQVPIRPETPNRTPPATVSE

Parental  KSIKEAIQVKQTQTPPDAVKLSNENQPKKAVVTDKTIDDSIDAVIARACAEREPDPFEFSSGSESEGDIF
          K..KE..QVKQTQT.PDA..LSNENQPKKA.VTDKTIDDSIDAVIARACAE.EPDPFEFSSGSESEGDIF
Retrocopy KISKEEVQVKQTQTSPDARMLSNENQPKKAMVTDKTIDDSIDAVIARACAEGEPDPFEFSSGSESEGDIF

Parental  TSPKRISGSECNTPKASTSSNNFTKSGSTPLPLSGGTSSSDNSWTMDASIDEVVRKAKLGTPSNMPPNFP
          TSPK.ISG.EC.TPKA.TSS.NF.KSGSTPLPLSGGTS.SDNS.T.D...DEVV.KAKLG.PSNMP.NFP
Retrocopy TSPKTISGWECTTPKA-TSSINFVKSGSTPLPLSGGTSGSDNSCTKDTLTDEVVGKAKLGMPSNMPQNFP

Parental  YISSPSVSPPTPEPLHKVCDEKAKLPSSVEVKKKLKKELKTKMKKKEKQRDREREKDKNKEKSKDKENKI
          Y..S.S.S.PTP.PLH....EKA.LP.SVEVKKKLKKELKTK.KKKEKQRDRERE.D.NKEKS.DKENK.
Retrocopy Y-NSTSMSVPTPDPLHNLYEEKANLPLSVEVKKKLKKELKTKLKKKEKQRDRERENDRNKEKSTDKENKV

Parental  KEKEKEAGRETKYPWKEILKDEDSDPYKFKIKEFEDVDTKVRLKDGAVRKEKEKHKDKKKDREKGKKDKE
          KEKEKEA..ETKYPWKE.LKDEDSDPYKFKIKEF.D.D..V.LKDG.VRKEKEKHKDKKK.REKGKKDKE
Retrocopy KEKEKEANKETKYPWKEFLKDEDSDPYKFKIKEFVDIDPRVKLKDGIVRKEKEKHKDKKKNREKGKKDKE

Parental  KREKEKVKDKSREDKLKAAPAPLVLP---PKEMALPLFSPTVAAARVPAMLPS-LAPMLPEKLFEEKEKP
          KRE.EK.KDK.RE...KAAPAPL..P...P....LP...P..A.......L.....P...E.....KEK.
Retrocopy KREREKMKDKGRESQMKAAPAPLEWPPLSPTAARLPTLLPSLAPVLQEKLLEGKVKPKEKERKKDKKEKK

Parental  KEKERKKDKKEKKK----KKEKEKEKEKKEK
          K....KK...EK.K....KKEKEKEK...EK
Retrocopy KKEKQKKEEGEKEKREREKKEKEKEKHNHEK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_35 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000034156	1 retrocopy	retro_ogar_35 ,