RetrogeneDB ID: retro_ogar_3473

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873878.1:124295..125390(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000034235
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: DUSP7
• Ensembl ID: ENSOGAG00000032809
• Aliases: None
• Description: dual specificity phosphatase 7 [Source:HGNC Symbol;Acc:3073]

Sequence

>retro_ogar_3473
CCAGGCCACAGCTCCAGCTGGGAGACAGAGCCAGAAAATGGCGAGGCCAGGAAGAATCCACCTTGCTTGACTGCTGACCA
CACAGGCTCATCAAGTCATCTCACACTGAAATGGCCATCAATCTTGCCATCCCGGGCTTCAGGCTGCGCCATCTGCTCTA
GGACAACCTGCTCATCCACTCCATCCTCCCCAACCACTCCAACAAGGAGCATTTTGCTGCACTCTGCAAGGCGGCCACTG
TGCTGCTGGAGGACAAGGCCGCGGCCCAGTGGCAGCCCAGACCCAGAGCTCCAGTCTTGGCACTTGGTCTGCTGATATAG
AAGCTATGGGACGATGGCTGCTGGACCTACTACCTCCAAGGTGGTTTCAACAAGTTCCAGACAGAGTCCTCAGAGCCCTA
TGAGACCAATGTGGACAATTCGTCCTCGCCTACTAGCTTGCCCTCTGTCCTGGGCCTGGGGGGCCTAGGCATCAGCTCTG
ACTGCTAGGTCTACAAGTCAGACACAGAGCTGCCTAGCAGTGCCACTGAGTCAGATGGCAGCCCTGTGCCATCTAGACAA
CCAGCCTTCCCTGTCCAGATCCTGCTCTATCTCTACCTTGGCTGCACCAAGGACTCCACCAACCTGGATGTGCTTGGCAA
GTACAGCATCAAGTATTTCCTCGATGTCACACCCAACTTTCCCAATGCTTTGGAGCATGGTGATGAGTTCACCTATAAGC
AGATCCCCATCTCTGACCACTGGAGCCAGAACCTTTCCTGGTTCTTCCCTGAGGCCGTCAGCTTCATTGATAAGGCCCAC
TCCAAGAATTGTGTTGTCCTGGTGCACTGCCTGGCAGGCATCAGCCACTCAGTGACAGTCACTGTGGCCTAGCCGATATA
GAAGATGAACCTGTCACTCAATGACGCCTATGACTTCGTCAAGAGGAAAAAGTTCAACATCTCCCCCAACTTCAACTTCA
TGGGGCAGCTGCTGGACTCTAAGCGGACGCTGGGGCCAAGCAGCCCATGCCACAACCATGCTGCCCAGTGAGCAGCTCTA
CTTCTCCACACCCACCAATCACAACCTGTTCCCACTCAATATGCTCCAGTCCACA

Alignment

ORF - retro_ogar_3473 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.07 %
• Parental protein coverage: 99.73 %
• Number of stop codons detected: 6
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  PCKSAEWLQEELEA-RGGASLLLLDCRPHELFESSHIETAINLAIPGLMLRRLRKGNLPIRSIIPNHADK
          P..S..W..E.....RG.....LLDC.PH.L..SSH.E.AINLAIPG..LR.L...NL.I.SI.PNH..K
Retrocopy PGHSSSWETEPENG<RGQEESTLLDC*PHRLIKSSHTEMAINLAIPGFRLRHLL*DNLLIHSILPNHSNK

Parental  ERFATRCKAATVLLYDEATAEWQPEPGAPASVLGLLLQKLRDDGCQAYYLQGGFNKFQTEYSEHCETNVD
          E.FA..CKAATVLL.D.A.A.WQP.P.AP...LGLL..KL.DDGC..YYLQGGFNKFQTE.SE..ETNVD
Retrocopy EHFAALCKAATVLLEDKAAAQWQPRPRAPVLALGLLI*KLWDDGCWTYYLQGGFNKFQTESSEPYETNVD

Parental  SSSSPSSSPPTSVLGLGGLRISSDCSDGESDRELPSSATESDGSPVPSSQPAFPVQILPYLYLGCAKDST
          .SSSP.S.P..SVLGLGGL.ISSDC....SD.ELPSSATESDGSPVPS.QPAFPVQIL.YLYLGC.KDST
Retrocopy NSSSPTSLP--SVLGLGGLGISSDC*VYKSDTELPSSATESDGSPVPSRQPAFPVQILLYLYLGCTKDST

Parental  NLDVLGKYGIKYILNVTPNLPNAFEHGGEFTYKQIPISDHWSQNLSQFFPEAISFIDEARSKKCGVLVHC
          NLDVLGKY.IKY.L.VTPN.PNA.EHG.EFTYKQIPISDHWSQNLS.FFPEA.SFID.A.SK.C.VLVHC
Retrocopy NLDVLGKYSIKYFLDVTPNFPNALEHGDEFTYKQIPISDHWSQNLSWFFPEAVSFIDKAHSKNCVVLVHC

Parental  LAGISRSVTVTVAYLMQKMNLSLNDAYDFVKRKKSNISPNFNFMGQLLDFERTLGLSSPCDNHA-PSEQL
          LAGIS.SVTVTVA....KMNLSLNDAYDFVKRKK.NISPNFNFMGQLLD..RTLG.SSPC.NHA.PSEQL
Retrocopy LAGISHSVTVTVA*PI*KMNLSLNDAYDFVKRKKFNISPNFNFMGQLLDSKRTLGPSSPCHNHA>PSEQL

Parental  YFSTPTNHNLFPLNTLEST
          YFSTPTNHNLFPLN.L.ST
Retrocopy YFSTPTNHNLFPLNMLQST

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_3473 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000032809	3 retrocopies	retro_ogar_3403, retro_ogar_3451, retro_ogar_3473 ,