RetrogeneDB ID: | retro_ogar_3407 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873820.1:586763..587646(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | VPS26B | ||
| Ensembl ID: | ENSOGAG00000015370 | ||
| Aliases: | None | ||
| Description: | vacuolar protein sorting 26 homolog B (S. pombe) [Source:HGNC Symbol;Acc:28119] |
Retrocopy-Parental alignment summary:
>retro_ogar_3407
AGTTTTCTTGGAGGCTTTTTCGGTACAATTTGCGAAATTGATATTGTCCTTCATGATGGAGAAACCAGGAAAATGGCAGA
AATGAAAACTGAAGATGGCAAAGTGGAAAAACACTGTGTCTTCTATGATGCTGTGTCTGTTTCAGGGAAGGTAAACGTAG
CCTTTTAGCAACCTGGAAAGAAGCTAGAGCACCAGGGAATTAGAAATGAATTTGGAGGTCAAACTGAACTTTTCAACGAC
AAGAGTAATACTCATGAATTTGTAAACCTAGTGAAAGAACCAGCCCTACCTGGAGAACTGACTCAGAGCACAAGTTAGGA
TTTTGAATTTATGCAAGTTGAAAAGCCATCAGAATCTTACATGGGTGCCAATGTCCGCTTGAGGTATTTTCTTAAAGTGA
CAATAGTAAGAAGACTGACAGATTTGGTAAAAGAATATGATCTTATTGTTCACCAGCTTGCCACTTAATTCAGATGTTAA
AATCTGTCAAGTTGGAAGTGGGCATTGAAGATTGTCCACATAGAGAAATTAAATATAATAAATTAAAGTATCATGTAAAG
GATGTGATTGCTGGGAAAATTTACTTTCTATTAGTAAGAATAAAAATACAACATACGGAGTTACAATTGATCAAAAAGAG
ATAACAGGAACTGGACCCAGTACAACGGAAACAGAAACAATTGCCAAATGTGAAATAATGGACGGTGCACCAGTAAAAGA
CGAAACAATTCTAATAAGACTATTTTTAGCAGGGTATGACCCAATTCCAACAAGGAGAGATGTGAACAAAAAGTTTTCAG
TAAGATACTTTTTGAATTTAGTGCTTGTTGATGAGAAAGACAGAAGGTACTTCAAGCAGCAGGAGATCGTTTTATGGAGA
AAA
ORF - retro_ogar_3407 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 64.43 % |
| Parental protein coverage: | 87.76 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | SFFG--FGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLALKNPNKRLEHQGIKIE |
| SF.G..FG...E..I.L.D.E.RK.AE.KTEDGK.EK...FYD...VSGKV..A...P.K.LEHQGI..E | |
| Retrocopy | SFLGGFFGTICEIDIVLHDGETRKMAEMKTEDGKVEKHCVFYDAVSVSGKVNVAF*QPGKKLEHQGIRNE |
| Parental | FIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYTGQNVKLRYFLRATISRRLN |
| F.GQ.EL..D..N.HEFV.LVK..A.PGE.TQS...DFEF..VEKP.ESY.G.NV.LRYFL..TI.RRL. | |
| Retrocopy | FGGQTELFNDKSNTHEFVNLVKEPALPGELTQSTS*DFEFMQVEKPSESYMGANVRLRYFLKVTIVRRLT |
| Parental | DVVKEMDIVVHTLST-YPELNSSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEID |
| D.VKE.D..VH.L.T.......S.K.EVGIEDC.H.E..YNK.KYH.KDVI.GKIYFLLVRIKI.H.E.. | |
| Retrocopy | DLVKEYDLIVHQLAT<LIQMLKSVKLEVGIEDCPHREIKYNKLKYHVKDVIAGKIYFLLVRIKIQHTELQ |
| Parental | IIK-RETTGTGPNVYHENDTIAKYEIMDGAPVRGESIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLI |
| .IK..E.TGTGP....E..TIAK.EIMDGAPV..E.I.IRLFLAGY...PT.RD.NKKFSVRY.LNLVL. | |
| Retrocopy | LIK<KEITGTGPST-TETETIAKCEIMDGAPVKDETILIRLFLAGYDPIPTRRDVNKKFSVRYFLNLVLV |
| Parental | DEEERRYFKQQEVVLWRK |
| DE..RRYFKQQE.VLWRK | |
| Retrocopy | DEKDRRYFKQQEIVLWRK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_3407 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000015370 | 2 retrocopies |
retro_ogar_3407 , retro_ogar_3408,
|