RetrogeneDB ID: retro_ogar_3365

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873804.1:37052..37713(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: UPRT
• Ensembl ID: ENSOGAG00000016773
• Aliases: None
• Description: uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28334]

Sequence

>retro_ogar_3365
ATGGCCCTGGATTTAAAGAGTTTGGACTCCATGCCCTGTCACAACCAGCAAGTAAATTCTGCCTCAACCCCAAGCCTGGA
GTTGCTGCAACCTGGCGACCCATTCCTGGATCATGCTGGGGAAAATAGTGCCTCCAAGGCTAAGCTGACTCTCCATACAG
GGCAAGCTCATTCTAGCATGCCAGCTGCACAACAAGACTCTGAGGCCTGCAGAGGTACCAGCTTCAACTCTGAAGACTGC
AGTGGTAGTGTTGACTGTAGCAACTGTGAAGCACTAGCTGGCAACTTCCTCCTAGGAGACTGTGAACTCTCCTGGCAGAT
TGGGACGTAACTTAAATTGCTGCCTTGGAATGATTAGATCTGGGAGCTGCAGACCATCATCTAGGACAAGATGGCCAGTG
AGGGGACTTCAAGTGAAGATCATTTGATCAGACTTGTGGAAGAGTGATCAAATCAGCAGCCATATAAAGAATACATGGTG
ACCACTCCAACAGGGTACAAGTATGATGGAGTGAAATTTGAGAAGGGAAATTGTGGAGTCAGCATACTGAGAAGCGGTGA
GCCAATGGAATAAGTTTTTATGAGACTGCTGTTGGTCCATTTGAATTGGAAAGATCCTAATTCAGAATGATGAGGAGACA
CAAAGAGCTAAAGTATGTTAT

Alignment

ORF - retro_ogar_3365 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.88 %
• Parental protein coverage: 71.94 %
• Number of stop codons detected: 6
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MATELRSLDSMLCHNQQVNSASTPSPESVRPGDPIPDHAGVNSASMAKLTLHTGHTPSSVPASERDPEAC
          MA..L.SLDSM.CHNQQVNSASTPS.E...PGDP..DHAG.NSAS.AKLTLHTG...SS.PA...D.EAC
Retrocopy MALDLKSLDSMPCHNQQVNSASTPSLELLQPGDPFLDHAGENSASKAKLTLHTGQAHSSMPAAQQDSEAC

Parental  GGASLNSENNSGNGDGSKYEAPADDFLLGDCELSWQIGAQLKLLPMNDQIRELQTIIRDKTASRGDFMFS
          .G.S.NSE..SG..D.S..EA.A..FLLGDCELSWQIG..LKLLP.ND.I.ELQTII.DK.AS.G....S
Retrocopy RGTSFNSEDCSGSVDCSNCEALAGNFLLGDCELSWQIGT*LKLLPWND*IWELQTII*DKMASEG--TSS

Parental  ADRLIRLVVEEGLNQLPYKECMVTTPTGYKYEGVKFEKGNCGVSIMRSGEAME-QGLRDCCRSIRIGKIL
          .D.LIRL.VEE..NQ.PYKE.MVTTPTGYKY.GVKFEKGNCGVSI.RSGE.ME...L.DCC.SI.IGKIL
Retrocopy EDHLIRL-VEE*SNQQPYKEYMVTTPTGYKYDGVKFEKGNCGVSILRSGEPME>KFL*DCCWSI*IGKIL

Parental  IQSDEETQRAKVYY
          IQ.DEETQRAKV.Y
Retrocopy IQNDEETQRAKVCY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_3365 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000027579	1 retrocopy	retro_mdom_191,
Otolemur garnettii	ENSOGAG00000016773	1 retrocopy	retro_ogar_3365 ,