RetrogeneDB ID: retro_ogar_331

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873520.1:28910091..28910595(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SLC25A32
• Ensembl ID: ENSOGAG00000002276
• Aliases: None
• Description: solute carrier family 25 (mitochondrial folate carrier), member 32 [Source:HGNC Symbol;Acc:29683]

Sequence

>retro_ogar_331
CTACAGGGACTTGATCAAGGAGTAACCCCAAATGTCTGGGGTGCAGGCTTATCCTGGGGACGCTACTTTTTCTTTTACAA
TGCAATCCAAACATATAAGACAGAACGAAGAGCTGAATGGTTAGAAGCAACAGAATATGCTCATCTCAACTGCTGAAGCT
GGAGCCATGACCCTCTGCATTACAAACCCGTGATGGGTAACAAAAACTCACCTAATGTTACAGTATAATGGTATTGTCAA
TTCTCCACAGCAGCAACATAAAGGAATGTTTGCTACACTTGTGAAAATATATAAATATGAGGGTATACGCAGCTTGTATA
GGTATTTATTCCTGAGCTCTTTGCAGCATCCCTTGGTGCCCTTCAGTTTATGGCATATGAACTGTTGAAGTACAACCAGC
ATATCAGTAGATTACCAGAAACACAGTTAAGCACAGTAGAATACATATCTGTTGCAGCAATATCCAAAATATTTGCTGTT
GCAGCAACATACCCATATCAAGTT

Alignment

ORF - retro_ogar_331 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.14 %
• Parental protein coverage: 50.75 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LRGLYQGVTPNVWGAGLSWGLYFFFYNAIKSYKTEGRAERLEATEY-LISAAEAGAMTLCITNPLWVTKT
          L.GL.QGVTPNVWGAGLSWG.YFFFYNAI..YKTE.RAE.LEATEY.LIS.AEAGAMTLCITNP.WVTKT
Retrocopy LQGLDQGVTPNVWGAGLSWGRYFFFYNAIQTYKTERRAEWLEATEY>LISTAEAGAMTLCITNP*WVTKT

Parental  RLMLQYDGVVNSPQQQYKGMFDTLVKIYKYEGVRGLYK-GFIPGLFGTSHGALQFMAYELLKLKYNQHIN
          .LMLQY.G.VNSPQQQ.KGMF.TLVKIYKYEG.R.LY...FIP.LF..S.GALQFMAYEL..LKYNQHI.
Retrocopy HLMLQYNGIVNSPQQQHKGMFATLVKIYKYEGIRSLYR<VFIPELFAASLGALQFMAYEL--LKYNQHIS

Parental  RLPEAQLSTVEYISVAALSKIFAVAATYPYQV
          RLPE.QLSTVEYISVAA.SKIFAVAATYPYQV
Retrocopy RLPETQLSTVEYISVAAISKIFAVAATYPYQV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_331 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000005569	1 retrocopy	retro_mdom_74,
Otolemur garnettii	ENSOGAG00000002276	2 retrocopies	retro_ogar_3038, retro_ogar_331 ,