RetrogeneDB ID: retro_ogar_3185

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873738.1:284935..285722(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000012295
• Aliases: None
• Description: None

Sequence

>retro_ogar_3185
CTGAACAGCCACAGCCACAATGGCAGCAGGCTGGTCAGCAGGACGGGTGCCTGAGCTGTGACCCTCTGGACCTCGAAGCT
GGCTTCTCCCCTCAGCCTCCATGTAGTCCAGGACTCCAGGTGGTAGTGGCCAAGAGTGAGCCAGCCTGGTACTCTGTACT
TGCCCAGCAGCCCCTCGGGGGGCAGCCCTAGGACCAGGATGATGAGGAGGAGGATGAGGAAGAAGAGGAGGGTGGGCAGG
AGGGCTCAGGAAAGCCCCCAAATGTAGGCCACCACCTGGGCCACCAGTGGGCACCTTTGAGAAGCAGAAGTGCCTCAGTG
ACTATGCCCTCATCTTTGGCATGTTTGGCATCATCATGGTGACAAAAACAGAGCTATCCTGGGGAGTGTACACCAAGGAG
TCTCTGTACTCATTTGCATTCAAATGCTTCATCAGTCTCCCCACTGTCATCCTACTGGGCCTCATGGTTCTGTACCACTC
CTGGGAGGTCCAGCTGTTCATGGTGGATAATGGAGCAGATGACTGGTCATGAGATGTGAGCATGTCTTCCTGGCTTCCTC
ATCTTGCTGGAATTGGCTGTGTATGCCATCCACCCTGTGCCTGGCCATTACCGCTTCACATGGAGTGCTCGGCTGGCCTT
CACATAAGTGCCATCAGTGGTAGAGGCTGATGTAGACATGTTGCTGTCCATCCTTATGTTTCTGTGCCTCTATCTGCTGG
GCAGTGTCATGCTCCTGCATAGTAAGATCTTCACAGATGCCTGAGCCGCAGTATCGGAGCCCTCAAC

Alignment

ORF - retro_ogar_3185 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.17 %
• Parental protein coverage: 52.38 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  MNSHSHNGSVGRPLVSGPGA-LSHDPPDPEAGCSPRPPHSPGLQVVVAKSEPARSS--PGSPRGQPQDQD
          .NSHSHN...G..LVS..GA.LS.DP.D.EAG.SP.PP.SPGLQVVVAKSEPA..S.....P.G......
Retrocopy LNSHSHN---GSRLVSRTGA<LSCDPLDLEAGFSPQPPCSPGLQVVVAKSEPAWYSVLAQQPLGGQP*DQ

Parental  DD-EEDEEDEEGGQRGSGKPPNVGHRLGHRRA-LFEKRKRLSDYALIFGMFGIVVMVTETELSWGVYTKE
          DD.EEDEE.EEGGQ.GSGKPPNVGH.LGH..A..FEK.K.LSDYALIFGMFGI..MVT.TELSWGVYTKE
Retrocopy DDEEEDEEEEEGGQEGSGKPPNVGHHLGHQWA<TFEKQKCLSDYALIFGMFGI-IMVTKTELSWGVYTKE

Parental  SLYSFALKCLISLSTVILLGLVVLYHAREIQLFMVDNGADDWRIAMT-CERVFLISLELAVCAIHPVPGH
          SLYSFA.KC.ISL.TVILLGL.VLYH..E.QLFMVDNGADDW......C...FLI.LELAV.AIHPVPGH
Retrocopy SLYSFAFKCFISLPTVILLGLMVLYHSWEVQLFMVDNGADDWS*DVS>CLPGFLILLELAVYAIHPVPGH

Parental  YRFTWTARLAFTYAPSVAEADVDVLLSIPMFLRLYLLGRVMLLHSKIFTDA-SSRSIGALN
          YRFTW.ARLAFT..PSV.EADVD.LLSI.MFL.LYLLG.VMLLHSKIFTDA..SRSIGALN
Retrocopy YRFTWSARLAFT*VPSVVEADVDMLLSILMFLCLYLLGSVMLLHSKIFTDA<LSRSIGALN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_3185 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000012295	1 retrocopy	retro_ogar_3185 ,