RetrogeneDB ID: retro_ogar_316

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873520.1:9385967..9386720(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000016463
• Aliases: None
• Description: None

Sequence

>retro_ogar_316
CTGACAAGTCTGATGCCTGGTGCAGGATTGCTTCCCATACCAACGCCAAGTCCCTTGACGACTCCTGGTGTTTCACTTAG
CAGTTTGGGAGCTATACCAGCAGCAGCATTAGACCCCAACATTACAACGCTTGGGGAGATACCACAGCCACCACTTATGG
GAAATGTGGATCCTTCCAAGATTGATGAAATTAGGAGAACAGTCTATGTTGGAAATTTGAATTCCCAGACAATGACAGCT
GAGCAACTACTTGAATTTTTTGAACAAGTTGGGGAAGTGAAGTTTGTGTGGATGGCAGGTGATGAGACTCAGCCAACTCG
GTTTGCTTTTGTGGAATTTGCAGACCAAAATTCTGTCCCAAGGGCCCTTGCTTTAAATGGAGTTAAGTTTGGAGACAGGC
CACTGAACATAAATCCCTTTAACAATGCATAGTAAAGCCCCCCGAGATGACACCTCAGGCCGCAGCTAAGGAATTAGAAG
TAATGAGCGAGTAGGAGAGGCTCAGTCGTTTATCTCAGCAGCTACTGAACCAGAGTCTGGAAAGAGCAATGAAAGAAAAG
GCGGTCAGTCTGGTTCCCACTCTCGCTCAAAACCCAGGTCTAGCTCAAAATCCCCTTCTAGAAGGAAAAGATCACAGTCA
AAACACAGGGAAAGGCGAAGGAGGAAGGGCAGGAGTTGTTCAGATCATCAAGAACATCCAAAACCATAAAGAGGAAATCT
TCTAGCTCTCCATCCCCTAGGAGGAGAAGGAGC

Alignment

ORF - retro_ogar_316 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.17 %
• Parental protein coverage: 50.5 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MTSLMPGAGLLPIPTPNPLTTLGVSLSSLGAIPAAALDPNITTLGEIPQPPLMGNVDPSKIDEIRRTVYV
          .TSLMPGAGLLPIPTP.PLTT.GVSLSSLGAIPAAALDPNITTLGEIPQPPLMGNVDPSKIDEIRRTVYV
Retrocopy LTSLMPGAGLLPIPTPSPLTTPGVSLSSLGAIPAAALDPNITTLGEIPQPPLMGNVDPSKIDEIRRTVYV

Parental  GNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHS
          GNLNSQT.TA.QLLEFF.QVGEVKFV.MAGDETQPTRFAFVEFADQNSVPRALA.NGV.FGDRPL.IN..
Retrocopy GNLNSQTMTAEQLLEFFEQVGEVKFVWMAGDETQPTRFAFVEFADQNSVPRALALNGVKFGDRPLNINPF

Parental  NNA-IVKPPEMTPQAAAKELEEVM-KRVREAQSFISAAIEPESGKSNERKGGRSRSHSRSKSRSSSKSHS
          NNA.IVKPPEMTPQAAAKEL.EVM..RV.EAQSFISAA.EPESGKSNERKGG.S................
Retrocopy NNA<IVKPPEMTPQAAAKEL-EVM<ERVGEAQSFISAATEPESGKSNERKGGQSGXXXXXXXXXXXXXXX

Parental  RRKRSQSKHRSRSHNRSRSRQ-KDRRRSRSPHKKRSKSRERRKSRS
          .RKRSQSKHR.R.....RS......R.S.....K.S.S...R..RS
Retrocopy XRKRSQSKHRERRRRKGRSCS<RSSRTSKTIKRKSSSSPSPRRRRS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_316 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000016463	1 retrocopy	retro_ogar_316 ,