RetrogeneDB ID: | retro_ogar_3134 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873725.1:1494813..1497103(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | TAX1BP1 | ||
| Ensembl ID: | ENSOGAG00000000427 | ||
| Aliases: | None | ||
| Description: | Tax1 (human T-cell leukemia virus type I) binding protein 1 [Source:HGNC Symbol;Acc:11575] |
Retrocopy-Parental alignment summary:
>retro_ogar_3134
ATGACATCCTTTCAAGAAGTCCCATTGCAGACTTCCAACTTTGCCCATGTCAACTTTCAAAATGTGGCCAAGAGTTACCT
TCCTAATGCTCACCTGGAATGTCATTACCCCTTAACTCTGTATATACATCTACATCCAAAATACTGAGTTGGTATATTCA
AGGTTGAGTAGAGTACTGCTTGTGATTATTACATATTTTTATGGTCCCCTATGTTTGAACATCATGTAGAAGGATCAATA
GTCAATTGTGTATTAGAATTTCAAGAATATTACCTTCCAAATGATGATGGAGAATTTTTCCAGTTCTGTTATGTTACCCA
CAAGGGCGAAATTTGTGGAGCAAATATACCTTTCTAGTTTTGAGCTACTTCTTTGGTTGAAGAGTTGCTTAGGATAGAAG
ATGAAAGAAATTCTGACATGTTGGTGATGACCACAAAAGATGGCCTTTTTCAGTTGAAAATTGAGAAAACCATAAAAAAA
AAAGAAGAGTTGTTAAAGCTAATTGCCATTCTGAAAAAATAAACAGTCCAACTTTGAGAACAAGTAGAAAGACTGGAAGG
AGAACTTAACCATGAGAAAGAAAGATGTGACCAACTGCAAGCAGAGCAAAAGGGTCTTACTGAAGCATCATAGTACTTAA
AAGTGGAAAACGAAGAGTGTAAGAAGAGATACAGTGATGCTACATCCAAAGCTCTATAGCTTGAGGAAGATACTACATCA
GTGACACATAAAGCAATTGAAAAGGAGACTGAATTAGACAGTATAAAAAACAAACACAGGAAGGCACAATATGAAAGAGA
ACAACTTGAATGTCAGTTGAAGACAGAAAAGGATGAGAATGAACTTTATAAGGTACATTTGAAGAATACAGAAATAGAAA
ATACCAAGCTTATGTCAGAGGTCCAGACTTTAAAGAATTTAGATGAAAACAAAGAAAGCATGATCATTCATTTCAAGGAA
GAGATTGGCAGACTACAGTTCTGTATGACCAAAAAGGAAAATCTGCAAAGGACTTTAAAGATTACAACCCTCAGTAAAGA
AGATACATTTTTTCTAAAGGAGCAACCTTGCAAAGCAGAGGAATAGGCTCAGGCAACTGGCAAAAAGTTATCTTTCTGAC
TAAAGAACTACGTGATGCTGTAAATGTGTGGGACAGAATGATAGCAGATCTACACAGTGCATGCTTGGAAAATGAGAAAG
TGAAAAAGGAGATAGCTGATGCAGTTACAGAACTTAAACCAAATTCTGTGAAAAAAGATCAGGAAAAGACTGATACACTG
GAACATGAATTGAGAAGAGAAGTTGAAGAGCTGAGACTACATCTTCAGATAGCTGCAGATCATTACAAGGAAAAATTTAA
AGAATGCCAGTGACCCCCAAAATAAATAAATAAATAAACTTTAACACCATTCAACCACTAATAATAGTGTCTTCACAAAG
AAAACTGAGAATCAGCAGAAAGTGAATAATGCTTTAGTAAACACAGATCCAGCCACGTCTGCCTCTGTGGCAGATGGAAA
GCCATCACCTTCTTCAGCAGAAGCAGAATTTGATGTGATAACAAAGGGGCGAGTCTGTGAAATGACCAAAATAATTGCTA
ACGAAACAGAAAAGTATAATAAGTGCAAAGAACTCTTGCAGGATGAGAAAACAAATGCAATAAATATGGTGGCGAACTTG
CAAAAATGGACCTGAAATGGAAAGAACAGGTGAAAATGCTGAAAATGTAAAATTTTAACTAGCTGAAGTAGAAGACAATT
ATAAACTTCAAGTGGCAGGAAAGACAAATAAATAAGTGGTCTGACTTCACATTTGGAAAACCTTTCGAGAGAGAAGGAAC
TAAAAGGGAGTGTAGAAAATCAAGCTGAAAGGAAAATGGAAGGTCATATTCCCAAAGTCCTCAGCAGGTCTTACAGTGTC
TCAGCACATGCTCAGAGCAAAATGGTTACATTCCTGCACTACCAAATGCACAGCCAATTCTGCAATATAGTAATCCTTAC
ATGACACAGGAAACAAGAGATGGAGCAGATGGTGCTTTTTACCCATATGAAATCCAAAGGACTCCTCTGACAGTCCCCTC
CTGGGGACTAGAAGACAATGTTGTCTGCAGCCAGCCTGCTTGAAACCTCAGTCAGTCGGATGGCTTAGAAGACCCTGAGG
ATAGAAAGAAGGTGAGAATGTGCCTACTGCTTCTGATCTTCCAAGTCAGCATTTATGTAGGCATGGGACAGGCTTTTGTT
TTGATTCGAGCTTTGATGTTCACAAGAAAGGCTCCATTTTTTCCTTGCTG
ORF - retro_ogar_3134 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 79.15 % |
| Parental protein coverage: | 93.51 % |
| Number of stop codons detected: | 14 |
| Number of frameshifts detected: | 7 |
Retrocopy - Parental Gene Alignment:
| Parental | MTSFQEVPLQTSNFAHVIFQNVAKSYLPNAYLEFHYTLTPYIHPHPKDWVGIFKVGWSTARDYYTFLWSP |
| MTSFQEVPLQTSNFAHV.FQNVAKSYLPNA.LE.HY.LT.YIH.HPK..VGIFKV..STA.DYY.FLWSP | |
| Retrocopy | MTSFQEVPLQTSNFAHVNFQNVAKSYLPNAHLECHYPLTLYIHLHPKY*VGIFKVE*STACDYYIFLWSP |
| Parental | MPEHYVEGSTVNCVLAFQGYYLPNDDGEFYQFCYVTHKGEIRGASTPFQFRAASPVEELLTMEDEGNSDM |
| M.EH.VEGS.VNCVL.FQ.YYLPNDDGEF.QFCYVTHKGEI.GA..PF.F.A.S.VEELL..EDE.NSDM | |
| Retrocopy | MFEHHVEGSIVNCVLEFQEYYLPNDDGEFFQFCYVTHKGEICGANIPF*F*ATSLVEELLRIEDERNSDM |
| Parental | LVVTTKAGLLELKIEKTMKEKEELLKLVAVLEKETAQLREQVGRLEGELNNEKERCDQLQAEQKGLIEAS |
| LV.TTK.GL..LKIEKT....EELLKL.A.L.K.T.QL.EQV.RLEGELN.EKERCDQLQAEQKGL.EAS | |
| Retrocopy | LVMTTKDGLFQLKIEKTXXXXEELLKLIAILKK*TVQL*EQVERLEGELNHEKERCDQLQAEQKGLTEAS |
| Parental | QSLKVENEECKKRYSDATSKALQLEEDIVSVTHKAIEKETELDSLKDKLRKVQHEREQLECQLKMEKDEK |
| ..LKVENEECKKRYSDATSKAL.LEED..SVTHKAIEKETELDS.K.K.RK.Q.EREQLECQLK.EKDE. | |
| Retrocopy | *YLKVENEECKKRYSDATSKAL*LEEDTTSVTHKAIEKETELDSIKNKHRKAQYEREQLECQLKTEKDEN |
| Parental | ELYKVHLKNTEIENTKLMSEVQTLKNLDGNKESMIVHFKEEIGRLQFCLAEKENLQRTLMLTTPSKEDTF |
| ELYKVHLKNTEIENTKLMSEVQTLKNLD.NKESMI.HFKEEIGRLQFC...KENLQRTL..TT.SKEDTF | |
| Retrocopy | ELYKVHLKNTEIENTKLMSEVQTLKNLDENKESMIIHFKEEIGRLQFCMTKKENLQRTLKITTLSKEDTF |
| Parental | FLKEQLRKAEEQVQATR-QKVIFLTKELSDAVNVRDRTMADLHTARLENEKVKKQLADAVAELKLNSVKK |
| FLKEQ..KAEE..QAT..QKVIFLTKEL.DAVNV.DR..ADLH.A.LENEKVKK..ADAV.ELK.NSVKK | |
| Retrocopy | FLKEQPCKAEE*AQATG<QKVIFLTKELRDAVNVWDRMIADLHSACLENEKVKKEIADAVTELKPNSVKK |
| Parental | DQEKTDTLEHELRREVEDLRLRLQMAADHY-KEKFKECQRLQKQ-INKLSDPTINNNSVFTKKIGTQQKV |
| DQEKTDTLEHELRREVE.LRL.LQ.AADHY.....K.....Q...INKL......NNSVFTKK...QQKV | |
| Retrocopy | DQEKTDTLEHELRREVEELRLHLQIAADHY>RKNLKNASDPQNK*INKL*HHSTTNNSVFTKKTENQQKV |
| Parental | NDASVNTDPATSASVTDRKPSPSGAEAEFDVVTKGQVCEMTKEIADKTEKYNKCKQLLQDETT-KCNKYA |
| N.A.VNTDPATSASV.D.KPSPS.AEAEFDV.TKG.VCEMTK.IA..TEKYNKCK.LLQDE.T.KCNKY. | |
| Retrocopy | NNALVNTDPATSASVADGKPSPSSAEAEFDVITKGRVCEMTKIIANETEKYNKCKELLQDEKT<KCNKYG |
| Parental | DELAKMELKWKEQVKI-AENVKLELVKVEDNYKLQLA-EKDKEISGLTSHLESLSREKEIKGSVENQAER |
| .ELAKM.LKWKEQVK..AENVK..L..VEDNYKLQ.A..KDK.ISGLTSHLE.LSREKE.KGSVENQAER | |
| Retrocopy | GELAKMDLKWKEQVKM<AENVKF*LAEVEDNYKLQVA<RKDK*ISGLTSHLENLSREKELKGSVENQAER |
| Parental | KMEGQ-HSQSPQQVLQCLSTCPEQNGHIPALPNAQPVLQYGNPYVTQETRDGADGAFYPDEIQRPPVRVP |
| KMEG...SQSPQQVLQCLSTC.EQNG.IPALPNAQP.LQY.NPY.TQETRDGADGAFYP.EIQR.P..VP | |
| Retrocopy | KMEGH<YSQSPQQVLQCLSTCSEQNGYIPALPNAQPILQYSNPYMTQETRDGADGAFYPYEIQRTPLTVP |
| Parental | SWGLEDNVVCSQPARNLSRPDGLEDPEDS-KEDENVPTAPDLPSQHLRGHGTGFCFDSSFDVHKKCPLCE |
| SWGLEDNVVCSQPA.NLS..DGLEDPED..KE.ENVPTA.DLPSQHL..HGTGFCFDSSFDVHKK..... | |
| Retrocopy | SWGLEDNVVCSQPA*NLSQSDGLEDPEDR<KEGENVPTASDLPSQHLCRHGTGFCFDSSFDVHKKGSIFS |
| Parental | LM |
| L. | |
| Retrocopy | LL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_3134 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000000427 | 1 retrocopy |
retro_ogar_3134 ,
|
| Otolemur garnettii | ENSOGAG00000011709 | 1 retrocopy |