RetrogeneDB ID: retro_ogar_30

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873748.1:630810..632748(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000000449
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000034361
• Aliases: None
• Description: None

Sequence

>retro_ogar_30
CCGGGCCCAGAGGCCGAGGACTTTGAGCGCAGCTCGCACTGGTCGGAGCTGTGCTGGCGGCAGAACGAGCAGCGGCGCCT
GGGCCTCTACTGCGACATCACCTTGTGCTTCGGCGGGGCCGGAGGCCCGGAGTTCCGGGCCCACCGCTCGGTGCTGGCCG
CCGCCACCAAGTACTTCAGGGCCCTGCTCTCGGGCCAGTTTGCCGAGTCCCGCTCGGGCCGGGTGGAGATGCGCGACTGG
CGCTGCGAGCCGGGGCCCGAACCCGCCACGGTGGAGGCCGTGATCCAGTACATGTACACCGGGCGCATCCGCCTCAGCAC
CGCCAGCGTGCACGAGGTGCTGGAGCTGGCCGACAGGTTTTTATTAACTCGTTTAAAAGAATTTTGTGGCGAATTTCTCA
AGAAAAGACTTCATCTCTCAAATTGTGTAGCCATTCATAGCTTAGCTCACATGTACAACCTAAGCCAGCTTGCTCTGAAA
GCTGTCGATATGATACGGAGAAATTTCCACCGAGTCATTCAGGATGAAAAATTTTATGCTTTACCTTTCCATTTCGTTCG
AGACTGGCTTTCAGACTTGGAAATCACGGTTGATTCTGAAGAGGCTCTCTTTGAAACAGTTTTGAAGTGGGTTCAGAGAA
ATGCTGAAGAGAGAGAGAGATATTTTGAAGAACTTTTTAAATTGCTCAGGTTGTCCCAGATGAAACCTACCTACCTTACT
TGGCGTGTCAAACCGGAGAGGCTGGTAGCCGATAATGAAGTTTGTGTCAAGTTGGTGGCTGAGGCAGTGGAGAGACATGC
CCTGAGAGCTGAGAATGTACAATCTGTCACCTTCCAGCCTCCTGCTTCTTATGTCTCATCATTACCTCGTTTTGGGCAAA
ACATGGACGTGATCATGGTTATTGGGGGTGTGTCAGAAGGAGGGGACTATTTAAGTGAATGTGTGGGATATTTTGTTGAT
GAGGACAGATGGGTAAACCTGCCCCATATTCATAATCACCTTGATGGACATGCTGTTGCAGTAACAGAATCTTACGTGTA
TGTTGCTGGATCGAGGGAACCAGGGTTTGCTAAAACTGTAGAAAGGTATAACCCAAATTTGAATACATGGCAACAAGTTT
CTAGTCTGATGACAGGAAAGCATTCTTTTGGACTGACAGAAGTCAAAGGGAAGCTCTATAGCATTGGAGGACACGGCAAC
TTTAGTCCTGGCTTTAAAGATGTGACTGTTTATAATCCTGAGCTTGATAAATGGTACAACTTGGAATCTGCACCAAAGAT
TCTTCGAGATGTCAAAGCACTAGCCGTTGAAGACCGCTTTGTGTACATTGCCGCCCGCACTCCTGTGAACCCGGACACTG
AAGATGAATTAACAGCTGTAATTACTTGCTATGATACAGGGACTCGACAGTGGCAAGATGTAGCGTCTTTGCCACTTATT
GACAATTACTGCTTTTTCCAAATGTCGGTGGTCAACTCAAACTTTTATCAGACAGCATCATGCTGTCCAAAGAGTTATTC
TTTAGAAAATGAAGAGGCAGTAAGAAAAATTGCCAGTCCAGCATCTGATGAGATCCTTGAAAGCCTGCCTCCAGAAGTCC
TTAGCATCGAAGGAGCAGCCATTTGCTATTACAAAGATGACATCTTCATTATTGGAGGCTGGAAAAACAGTGCTGATATT
GACAAACAGTATCGGAAAGAAGCCTATCGATACTGTGCTGAGAGAAAGAGGTGGATGCTTCTTCCTCCCATGCCACAACC
TCGTTGTAGAGCCACTGCTTGTCATGTGAGGATCCCATACCGGTACTTGCATGGCACACAGAGATATCCTAGACCTCAAA
ACCTAATGTGGCAGAAAGGCTGCATCAGACAGATTCAAGAAAGACATCGGCACACCGTAAACATGCGGAGAGTCGCCTGC
TTTCCGATCAAATGCTAG

Alignment

ORF - retro_ogar_30 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.51 %
• Parental protein coverage: 94.74 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PGPEAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSES
          PGPEAEDFE.SSH.SEL.WRQNEQRR.GL.CDITLCFGGAGG.EFRAHRSVLAAAT.YF..LLSGQF.ES
Retrocopy PGPEAEDFERSSHWSELCWRQNEQRRLGLYCDITLCFGGAGGPEFRAHRSVLAAATKYFRALLSGQFAES

Parental  RSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKFLKKKL
          RSGRVEMR.W..EPGPEP.TVEAVI.YMYTGRIR.ST.SVHEVLELADRFLL.RLKEFCGE...FLKK.L
Retrocopy RSGRVEMRDWRCEPGPEPATVEAVIQYMYTGRIRLSTASVHEVLELADRFLLTRLKEFCGE---FLKKRL

Parental  HLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETV
          HLSNCVAIHSLAHMY.LSQLALKA.DMIRRNFH.VIQDE.FY.LPFH..RDWLSDLEITVDSEE.LFETV
Retrocopy HLSNCVAIHSLAHMYNLSQLALKAVDMIRRNFHRVIQDEKFYALPFHFVRDWLSDLEITVDSEEALFETV

Parental  LKWVQRNAEERERYFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADAVERHALRAENIQSAT
          LKWVQRNAEERERYFEELFKLLRLSQMKPTYLT..VKPERLVA.NEVCVKLVA.AVERHALRAEN.QS.T
Retrocopy LKWVQRNAEERERYFEELFKLLRLSQMKPTYLTWRVKPERLVADNEVCVKLVAEAVERHALRAENVQSVT

Parental  FQHPASHVSLLPRFGQNMDVIMVIGGVSEGGDYLSECVGYFVDEDRWVNLPHIHNHLDGHAVAVTESYVY
          FQ.PAS.VS.LPRFGQNMDVIMVIGGVSEGGDYLSECVGYFVDEDRWVNLPHIHNHLDGHAVAVTESYVY
Retrocopy FQPPASYVSSLPRFGQNMDVIMVIGGVSEGGDYLSECVGYFVDEDRWVNLPHIHNHLDGHAVAVTESYVY

Parental  VAGSMEPGFAKTVERYNPNLNTWEHVCSLMTRKHSFGLTEVKGKLYSIGGHGNFSPGFKDVTVYNPELDK
          VAGS.EPGFAKTVERYNPNLNTW..V.SLMT.KHSFGLTEVKGKLYSIGGHGNFSPGFKDVTVYNPELDK
Retrocopy VAGSREPGFAKTVERYNPNLNTWQQVSSLMTGKHSFGLTEVKGKLYSIGGHGNFSPGFKDVTVYNPELDK

Parental  WHNLESAPKILRDVKALAIEDRFVYIAARTPVDRDTEDGLKAVITCYDTETRQWQDVESLPLIDNYCFFQ
          W.NLESAPKILRDVKALA.EDRFVYIAARTPV..DTED.L.AVITCYDT.TRQWQDV.SLPLIDNYCFFQ
Retrocopy WYNLESAPKILRDVKALAVEDRFVYIAARTPVNPDTEDELTAVITCYDTGTRQWQDVASLPLIDNYCFFQ

Parental  MSVVNSNFYQTASCCPKSYSLENEEAVRKIASQVSDEILESLPPEVLSIEGAAICYYKDDVFIIGGWKNS
          MSVVNSNFYQTASCCPKSYSLENEEAVRKIAS..SDEILESLPPEVLSIEGAAICYYKDD.FIIGGWKNS
Retrocopy MSVVNSNFYQTASCCPKSYSLENEEAVRKIASPASDEILESLPPEVLSIEGAAICYYKDDIFIIGGWKNS

Parental  DDIDKQYRKEAYRYCAERKRWMLLPPMPQPRCRATACHVRIPYRYLHGTQRYPMPQNLMWQKDRIRQMQE
          .DIDKQYRKEAYRYCAERKRWMLLPPMPQPRCRATACHVRIPYRYLHGTQRYP.PQNLMWQK..IRQ.QE
Retrocopy ADIDKQYRKEAYRYCAERKRWMLLPPMPQPRCRATACHVRIPYRYLHGTQRYPRPQNLMWQKGCIRQIQE

Parental  IHRHALNMRRVPSSQIEC
          .HRH..NMRRV....I.C
Retrocopy RHRHTVNMRRVACFPIKC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_30 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000034361	1 retrocopy	retro_ogar_30 ,