RetrogeneDB ID: retro_ogar_2996

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873693.1:2699628..2700746(-)
• Located in intron of: ENSOGAG00000029308

Retrocopy information

• Ensembl ID: ENSOGAG00000025807
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ABHD8
• Ensembl ID: ENSOGAG00000007003
• Aliases: None
• Description: abhydrolase domain containing 8 [Source:HGNC Symbol;Acc:23759]

Sequence

>retro_ogar_2996
CCTAGATGAGGACACACCATGCTGACTGGGGTGACAGATGGTATCTTCTGCCTGCTAGGCTCACCCAGCAACTCCGTAGC
ACTGTTGGAGAGCATGGAGTCCAGCGATGGCTACACCTTTGTGGAGGTCAAACCTGGTCATGTGCTGTGGGTAAAGCACG
CTGGACCCTCCCAAACCCCCACTCCACCTCCATCATCACCACAAATGCTGCCCAGGGGGACAGATCTGGCTTGGTCCACT
ACCAGTGCCGGATCACTGTCTACCACAAGGGGCGGTTACAGGTGGAAAACCTGGGCCGGACACCTCAAGCTGACTTTCTG
CATGGACAGAAAGGCTCTGGAGAGCCTCCTGCTGCCCTGGAGGTGGAGCTGACTGACCCAGCGGGCAGTGCCAACAGTGG
CAATGGTAGTAGTGGACAGCGGCGGCGAGCCAGATGCCCCAAGAGGACCATCCACACTGACTGTGAGAAGCGCATCACTA
TCTGCAAAGGCACCCAGGCCGATGTGGTGCTCTTTTTCATCCACGGTGTTGGCGGCTCCCTGGCCATCTGGAAGGAGCAG
CTGGAATTCTTTGTACGCCTAGGCTATGAGGTGGTGGCACCTGACCTGGCAGGCCATGGGGCCAGTTCTGCACCCCAAGT
GGCTGCAGCCTGTAACTTCTATGCACTGGCTGAGGACATGCAGACCATCTTCAAGCACTACGCCAAAAAGCGAAATGTGC
TCATTGGGCATTCCTCTGGTGTCTCCTGCACATTCCTGTCACATGAGTGCCCAGACCTGGTGCACAAGGTGATTATGATC
AATGGCAGGAGCCCCACTGCACTGGAGCCAGGCTTCTGCTCCATCTTCAATATGCCCACCTGTGTCCTGCACTGCTTTTC
ACCCTGCCTGGTCTAGAGCTTCCTCAAGGTTGGCTTTTGCCCACCAAGGGGCCAAGGAGAAGTAGCTCGTTAAGAGGGCA
GTGCCTTCAACATGTCATCTTTTGTGCTACGGGCCATGATGAGTGGCCAATACTGGCCCGAAGGTGATGAAGTCTACCAC
GTGGAGCTCACCGTGCCCGTCCCGCTTGTCCATGGTATGTACAAGTTTGTGCCAATGGAGGAAGACCAGTGCATGGCT

Alignment

ORF - retro_ogar_2996 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.36 %
• Parental protein coverage: 87.27 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  PLTGHIMLTGVTDGIFCCLLGAPPNSVAPLESVESSDGYTFVEVKPGRVLRVKHAGPSPTPTPPPPSPQ-
          P..GH.MLTGVTDGIFC.LLG.P.NSVA.LES.ESSDGYTFVEVKPG.VL.VKHAGPS.TPTPPP.SPQ.
Retrocopy PR*GHTMLTGVTDGIFC-LLGSPSNSVALLESMESSDGYTFVEVKPGHVLWVKHAGPSQTPTPPPSSPQ<

Parental  DAAQGDRSGLVHCQRRITVYRNGRLLVENLGRAPRADLLHGQNGSGEPPAALEVELTDPAGSDGRSGMGS
          .AAQGDRSGLVH.Q.RITVY..GRL.VENLGR.P.AD.LHGQ.GSGEPPAALEVELTDPAGS...SG.GS
Retrocopy NAAQGDRSGLVHYQCRITVYHKGRLQVENLGRTPQADFLHGQKGSGEPPAALEVELTDPAGS-ANSGNGS

Parental  ANSGNGSSGRRRRARRPKRTIHIDCEKRITSCKGTQADVVLFFIHGVGGSLAIWKEQLDFFVRLGYEVVA
          .....G...R.R...R...T...DCEKRIT.CKGTQADVVLFFIHGVGGSLAIWKEQL.FFVRLGYEVVA
Retrocopy ----SGQRRRARCPKRTIHT---DCEKRITICKGTQADVVLFFIHGVGGSLAIWKEQLEFFVRLGYEVVA

Parental  PDLAGHGASSAPQVAAAYTFYALAEDMRAIFKRYAKKRNVLIGHSYGVSFCTFLAHEYPDLVHKVIMING
          PDLAGHGASSAPQVAAA..FYALAEDM..IFK.YAKKRNVLIGHS.GVS.CTFL.HE.PDLVHKVIMING
Retrocopy PDLAGHGASSAPQVAAACNFYALAEDMQTIFKHYAKKRNVLIGHSSGVS-CTFLSHECPDLVHKVIMING

Parental  GGPTALEPSFCSIFNMPTCVLHCLSPCLAWSFLKAG-FARQGAKEKQLLK-EGNAFNVSSFVLRAMMSGQ
          ..PTALEP.FCSIFNMPTCVLHC.SPCL..SFLK.G.FA.QGAKEK.L.K.EG.AFN.SSFVLRAMMSGQ
Retrocopy RSPTALEPGFCSIFNMPTCVLHCFSPCLV*SFLKVG>FAHQGAKEK*LVK<EGSAFNMSSFVLRAMMSGQ

Parental  YWPEGDEVYHAELTVPVLLVHGMHDKFVPVEEDQRMA
          YWPEGDEVYH.ELTVPV.LVHGM..KFVP.EEDQ.MA
Retrocopy YWPEGDEVYHVELTVPVPLVHGMY-KFVPMEEDQCMA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2996 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000007003	1 retrocopy	retro_ogar_2996 ,